Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   N0B40_RS19915 Genome accession   NZ_CP104203
Coordinates   4347070..4347723 (-) Length   217 a.a.
NCBI ID   WP_260542701.1    Uniprot ID   -
Organism   Chryseobacterium oranimense strain 33-M-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4342070..4352723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B40_RS19895 (N0B40_19895) der 4343769..4345079 (+) 1311 WP_260542693.1 ribosome biogenesis GTPase Der -
  N0B40_RS19900 (N0B40_19900) - 4345130..4345474 (+) 345 WP_260542695.1 four helix bundle protein -
  N0B40_RS19905 (N0B40_19905) upp 4345525..4346175 (+) 651 WP_260542697.1 uracil phosphoribosyltransferase -
  N0B40_RS19910 (N0B40_19910) - 4346176..4346868 (-) 693 WP_260542699.1 alpha/beta fold hydrolase -
  N0B40_RS19915 (N0B40_19915) comF 4347070..4347723 (-) 654 WP_260542701.1 ComF family protein Machinery gene
  N0B40_RS19920 (N0B40_19920) - 4347859..4349346 (-) 1488 WP_260542702.1 helix-turn-helix domain-containing protein -
  N0B40_RS19925 (N0B40_19925) aceB 4349471..4351048 (+) 1578 WP_260542703.1 malate synthase A -
  N0B40_RS19930 (N0B40_19930) aceA 4351188..4352468 (+) 1281 WP_260542705.1 isocitrate lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25193.10 Da        Isoelectric Point: 7.0068

>NTDB_id=728030 N0B40_RS19915 WP_260542701.1 4347070..4347723(-) (comF) [Chryseobacterium oranimense strain 33-M-3]
MILDLFFPNRCIDCSRIIDGDLLVCSLCFEHIHFTHADYFSDTIIKEKCRLLFPVERTYALMKFEENGLSRKLIHELKYK
SRENAGKILAEWTTERLDFKDEKPDLLVSVPLHPKKLRERGYNQLHLFTEILSEFYTIPFDHELIQRNHYSKAQALKDKK
HRLETANPFSLSKPISGKHVLLIDDVFTTGNTVSSIAWEILNAGENRVSVLVMAVDA

Nucleotide


Download         Length: 654 bp        

>NTDB_id=728030 N0B40_RS19915 WP_260542701.1 4347070..4347723(-) (comF) [Chryseobacterium oranimense strain 33-M-3]
ATGATATTAGATTTATTTTTTCCAAACCGCTGTATAGACTGCAGCCGGATCATTGATGGAGATCTTTTAGTCTGCAGCTT
ATGCTTTGAACATATCCATTTTACGCATGCTGATTATTTCAGTGATACTATTATTAAAGAAAAATGCAGGCTTCTGTTTC
CTGTTGAAAGAACCTATGCCTTAATGAAATTCGAGGAAAACGGTTTAAGCCGGAAACTGATCCATGAGCTGAAATACAAA
AGCAGGGAAAATGCTGGAAAAATCCTCGCCGAATGGACAACAGAACGCCTGGACTTTAAAGACGAGAAACCTGATCTTCT
GGTTTCTGTTCCGCTTCACCCTAAAAAGCTAAGAGAAAGAGGTTATAATCAACTGCATTTATTTACAGAAATTCTGTCAG
AATTTTATACTATTCCTTTTGATCATGAGCTCATACAGAGAAATCATTATTCAAAAGCACAGGCGTTAAAAGATAAGAAA
CACCGTCTGGAAACAGCGAATCCTTTTTCTCTCTCAAAACCTATTTCAGGAAAACACGTTCTTTTAATTGATGATGTTTT
TACGACGGGTAATACAGTTTCATCCATTGCCTGGGAAATTTTAAATGCAGGAGAGAATAGGGTAAGTGTTTTGGTAATGG
CAGTGGATGCGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.852

99.539

0.516