Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   N2A95_RS05025 Genome accession   NZ_CP104190
Coordinates   993983..994852 (+) Length   289 a.a.
NCBI ID   WP_004234319.1    Uniprot ID   -
Organism   Streptococcus parauberis strain HFTC0064     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 988983..999852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A95_RS04995 (N2A95_04995) - 989232..990110 (+) 879 WP_003105640.1 F0F1 ATP synthase subunit gamma -
  N2A95_RS05000 (N2A95_05000) atpD 990227..991633 (+) 1407 WP_004234323.1 F0F1 ATP synthase subunit beta -
  N2A95_RS05005 (N2A95_05005) - 991646..992062 (+) 417 WP_003103020.1 F0F1 ATP synthase subunit epsilon -
  N2A95_RS05010 (N2A95_05010) - 992188..992424 (+) 237 WP_003105566.1 DUF1146 family protein -
  N2A95_RS05015 (N2A95_05015) murA 992489..993760 (+) 1272 WP_004234322.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  N2A95_RS05020 (N2A95_05020) - 993764..993952 (+) 189 WP_004234321.1 DNA-directed RNA polymerase subunit beta -
  N2A95_RS05025 (N2A95_05025) endA 993983..994852 (+) 870 WP_004234319.1 DNA/RNA non-specific endonuclease Machinery gene
  N2A95_RS05030 (N2A95_05030) pheS 995128..996171 (+) 1044 WP_003106509.1 phenylalanine--tRNA ligase subunit alpha -
  N2A95_RS05035 (N2A95_05035) - 996257..996781 (+) 525 WP_004234315.1 N-acetyltransferase -
  N2A95_RS05040 (N2A95_05040) pheT 996796..999201 (+) 2406 WP_003106512.1 phenylalanine--tRNA ligase subunit beta -
  N2A95_RS05045 (N2A95_05045) - 999378..999623 (+) 246 WP_238570159.1 PfkB family carbohydrate kinase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31932.66 Da        Isoelectric Point: 9.8666

>NTDB_id=727950 N2A95_RS05025 WP_004234319.1 993983..994852(+) (endA) [Streptococcus parauberis strain HFTC0064]
MSNHNSKNWKNIGSLILLIFVLAGSYLSKNNVISDNNPIKQIYQSVTGESDGKPFTKDNNNPETPSKAQALTVMTSHVKN
QLVGKITWNGAGAFIINNNKTNLNAKVSSAPYANNQIKYVQGRKVPLVANALLAKSTRQYQNRNETGNGYTNWKPAGWHQ
LHGLLGEYDHAVDRGHLLGYAIVGGLKGFDASTSNPSNIATQLSWANQAADEDSTGQNYYETLIRHALDQNKRVRYRVTL
VYEGNNILSKGSHLEAKSDDGSLEFNVFIPNIQKGIKVNYQTGQVDIER

Nucleotide


Download         Length: 870 bp        

>NTDB_id=727950 N2A95_RS05025 WP_004234319.1 993983..994852(+) (endA) [Streptococcus parauberis strain HFTC0064]
ATGTCAAATCACAATTCCAAAAATTGGAAAAATATAGGTAGTCTTATCTTGCTAATTTTCGTTCTAGCAGGTTCCTATCT
AAGTAAGAACAATGTCATTTCGGATAATAATCCGATTAAACAAATCTATCAATCAGTAACCGGTGAAAGTGATGGAAAGC
CTTTTACCAAGGATAATAATAACCCTGAAACGCCAAGTAAAGCTCAAGCATTGACGGTAATGACTAGTCATGTTAAAAAT
CAATTAGTTGGTAAAATTACATGGAACGGTGCGGGTGCTTTTATTATCAATAATAACAAAACAAATTTAAATGCTAAGGT
GTCTAGTGCCCCTTATGCTAATAATCAAATTAAATATGTACAAGGTCGAAAAGTGCCACTTGTCGCAAATGCCTTATTAG
CAAAGTCAACAAGACAATATCAAAATCGTAATGAAACAGGTAATGGTTACACCAATTGGAAACCTGCCGGATGGCATCAG
TTACATGGTTTGTTGGGGGAATATGACCATGCGGTGGACAGAGGTCACCTGTTAGGCTATGCCATAGTTGGTGGACTTAA
GGGGTTTGATGCCTCAACGAGTAACCCAAGCAACATAGCAACGCAATTATCATGGGCTAATCAAGCAGCAGATGAAGATT
CAACTGGTCAAAACTATTATGAGACGCTAATACGACATGCACTTGATCAAAATAAGCGTGTGCGCTATCGTGTAACTTTA
GTTTATGAAGGGAACAATATTTTATCTAAAGGAAGTCATTTGGAAGCAAAATCTGATGATGGAAGCTTAGAATTTAATGT
GTTCATTCCAAATATTCAAAAAGGAATAAAAGTCAATTATCAGACTGGTCAGGTCGATATAGAACGCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(92-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

64.159

78.201

0.502
  endA Streptococcus pneumoniae D39

64.159

78.201

0.502
  endA Streptococcus pneumoniae R6

64.159

78.201

0.502
  endA Streptococcus pneumoniae TIGR4

64.159

78.201

0.502