Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   N2A94_RS09290 Genome accession   NZ_CP104048
Coordinates   1767775..1768719 (-) Length   314 a.a.
NCBI ID   WP_003104982.1    Uniprot ID   A0AAE4HY29
Organism   Streptococcus parauberis strain KSP20     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1762775..1773719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A94_RS09290 (N2A94_09290) amiF 1767775..1768719 (-) 945 WP_003104982.1 ATP-binding cassette domain-containing protein Regulator
  N2A94_RS09295 (N2A94_09295) amiE 1768712..1769782 (-) 1071 WP_003107438.1 ABC transporter ATP-binding protein Regulator
  N2A94_RS09300 (N2A94_09300) amiD 1769791..1770717 (-) 927 WP_041828589.1 oligopeptide ABC transporter permease OppC Regulator
  N2A94_RS09305 (N2A94_09305) amiC 1770717..1772216 (-) 1500 WP_013794303.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 35745.06 Da        Isoelectric Point: 6.9314

>NTDB_id=727365 N2A94_RS09290 WP_003104982.1 1767775..1768719(-) (amiF) [Streptococcus parauberis strain KSP20]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNDTSSGEIIYDGKQINKKKSNS
EREELIKKIQMIFQDPAASLNERATVDYIISEGLYNHKLFKSEEERKDKIKNMMTEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMDPEFIIADEPISALDVSVRAQVLNLLKRMQREKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFI
NPVHPYTKSLLSAVPIPDPILERQKKLLVYNVDQHDYTVDKPEMVEIQPGHFVWANKLETEKYKKEIADRQQSN

Nucleotide


Download         Length: 945 bp        

>NTDB_id=727365 N2A94_RS09290 WP_003104982.1 1767775..1768719(-) (amiF) [Streptococcus parauberis strain KSP20]
ATGTCTGAGAAGCTAGTTGAAGTCAAAGACTTAGAAATTTCCTTCGGTGAAGGAAAGAAAAAATTTGTTGCTGTTAAAAA
TGCCAATTTCTTTATTAATCGAGGGGAAACTTTTTCTTTGGTTGGTGAGTCAGGAAGTGGGAAAACAACAATTGGGCGTG
CTATCATTGGTTTAAATGATACGAGTTCAGGTGAAATCATTTATGATGGTAAACAAATCAATAAGAAAAAAAGTAATTCA
GAACGTGAAGAATTAATTAAAAAGATTCAAATGATCTTTCAAGATCCAGCAGCAAGTTTGAATGAACGTGCAACTGTTGA
CTATATTATTTCTGAAGGACTATACAATCATAAACTGTTCAAAAGTGAAGAAGAACGTAAAGATAAAATCAAAAACATGA
TGACAGAAGTTGGACTTTTGTCTGAACATTTAACACGTTATCCTCATGAATTTTCAGGTGGACAACGTCAGCGTATCGGG
ATTGCGCGTGCTTTAGTTATGGATCCAGAATTCATTATTGCTGATGAGCCTATCTCGGCTCTAGACGTTTCGGTTCGAGC
TCAGGTGCTAAATCTTCTAAAACGGATGCAAAGAGAAAAAGGTTTAACTTATCTCTTTATTGCCCATGATTTATCAGTAG
TTCGGTTCATATCTGATCGAATCGCAGTTATTCATAAAGGTGTTATTGTAGAAGTAGCTGAAACTGAAGAATTATTTATC
AATCCAGTTCATCCATATACTAAATCTCTATTATCCGCTGTACCGATTCCGGATCCAATTTTGGAAAGACAGAAGAAACT
TCTTGTCTATAACGTTGATCAGCATGACTATACAGTTGACAAACCAGAAATGGTAGAAATCCAACCAGGTCATTTCGTTT
GGGCGAATAAATTAGAAACAGAGAAATATAAAAAGGAAATTGCTGATAGACAGCAGTCCAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

81.699

97.452

0.796
  amiF Streptococcus thermophilus LMD-9

81.373

97.452

0.793
  amiF Streptococcus salivarius strain HSISS4

81.046

97.452

0.79