Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   N2A94_RS02520 Genome accession   NZ_CP104048
Coordinates   477788..478657 (+) Length   289 a.a.
NCBI ID   WP_041828416.1    Uniprot ID   A0AAE4KZN7
Organism   Streptococcus parauberis strain KSP20     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 472788..483657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A94_RS02490 (N2A94_02490) - 473037..473915 (+) 879 WP_003105640.1 F0F1 ATP synthase subunit gamma -
  N2A94_RS02495 (N2A94_02495) atpD 474032..475438 (+) 1407 WP_004234323.1 F0F1 ATP synthase subunit beta -
  N2A94_RS02500 (N2A94_02500) - 475451..475867 (+) 417 WP_003103020.1 F0F1 ATP synthase subunit epsilon -
  N2A94_RS02505 (N2A94_02505) - 475993..476229 (+) 237 WP_003105566.1 DUF1146 family protein -
  N2A94_RS02510 (N2A94_02510) murA 476294..477565 (+) 1272 WP_004234322.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  N2A94_RS02515 (N2A94_02515) - 477569..477757 (+) 189 WP_003104489.1 DNA-directed RNA polymerase subunit beta -
  N2A94_RS02520 (N2A94_02520) endA 477788..478657 (+) 870 WP_041828416.1 DNA/RNA non-specific endonuclease Machinery gene
  N2A94_RS02525 (N2A94_02525) pheS 478933..479976 (+) 1044 WP_003106509.1 phenylalanine--tRNA ligase subunit alpha -
  N2A94_RS02530 (N2A94_02530) - 480062..480586 (+) 525 WP_003105886.1 N-acetyltransferase -
  N2A94_RS02535 (N2A94_02535) pheT 480601..483006 (+) 2406 WP_013793802.1 phenylalanine--tRNA ligase subunit beta -
  N2A94_RS02540 (N2A94_02540) - 483231..483428 (+) 198 WP_231082312.1 PfkB family carbohydrate kinase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31918.64 Da        Isoelectric Point: 9.8666

>NTDB_id=727344 N2A94_RS02520 WP_041828416.1 477788..478657(+) (endA) [Streptococcus parauberis strain KSP20]
MSNHNSKNWKNIGSLILLIFVLAGSYLSKNNVISDNNPIKQIYQSVTGESDGKPFTKDNNNPDTPSKAQALTVMTSHVKN
QLVGKITWNGAGAFIINNNKTNLNAKVSSAPYANNQIKYVQGRKVPLVANALLAKSTRQYQNRNETGNGYTNWKPAGWHQ
LHGLLGEYDHAVDRGHLLGYAIVGGLKGFDASTSNPSNIATQLSWANQAADEDSTGQNYYETLIRHALDQNKRVRYRVTL
VYEGNNILSKGSHLEAKSDDGSLEFNVFIPNIQKGIKVNYQTGQVDIER

Nucleotide


Download         Length: 870 bp        

>NTDB_id=727344 N2A94_RS02520 WP_041828416.1 477788..478657(+) (endA) [Streptococcus parauberis strain KSP20]
ATGTCAAATCACAATTCCAAAAATTGGAAAAATATAGGTAGTCTTATCTTGCTAATTTTCGTTCTAGCAGGTTCCTATCT
AAGTAAGAACAATGTCATTTCGGATAATAATCCGATTAAACAAATCTATCAATCAGTAACCGGTGAAAGTGATGGAAAGC
CTTTTACCAAGGATAATAATAACCCTGATACGCCAAGTAAAGCTCAAGCATTGACGGTAATGACTAGTCATGTTAAAAAT
CAATTAGTTGGTAAAATTACATGGAACGGTGCGGGTGCTTTTATTATCAATAATAACAAAACAAATTTAAATGCTAAGGT
GTCTAGTGCCCCTTATGCTAATAATCAAATTAAATATGTACAAGGTCGAAAAGTGCCACTTGTCGCAAATGCCTTATTAG
CAAAGTCAACAAGACAATATCAAAATCGTAATGAAACAGGTAATGGTTACACCAATTGGAAACCTGCCGGATGGCATCAG
TTACATGGTTTGTTGGGGGAATATGACCATGCGGTGGACAGAGGTCACCTGTTAGGCTATGCCATAGTTGGTGGACTTAA
GGGGTTTGATGCCTCAACGAGTAACCCAAGCAACATAGCAACGCAATTATCATGGGCTAATCAAGCAGCAGATGAAGATT
CAACTGGTCAAAACTATTATGAGACGCTAATACGACATGCACTTGATCAAAATAAGCGTGTGCGCTATCGTGTAACTTTA
GTTTATGAAGGGAACAATATTTTATCTAAAGGAAGTCATTTGGAAGCAAAATCTGATGATGGAAGCTTAGAATTTAATGT
GTTCATTCCAAATATTCAAAAAGGAATAAAAGTCAATTATCAGACTGGTCAGGTCGATATAGAACGCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(92-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

63.717

78.201

0.498
  endA Streptococcus pneumoniae D39

63.717

78.201

0.498
  endA Streptococcus pneumoniae R6

63.717

78.201

0.498
  endA Streptococcus pneumoniae TIGR4

63.717

78.201

0.498