Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   N2A93_RS03860 Genome accession   NZ_CP104046
Coordinates   722900..723769 (+) Length   289 a.a.
NCBI ID   WP_003104439.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP14     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 717900..728769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A93_RS03830 (N2A93_03830) - 718149..719027 (+) 879 WP_003105640.1 F0F1 ATP synthase subunit gamma -
  N2A93_RS03835 (N2A93_03835) atpD 719144..720550 (+) 1407 WP_003104762.1 F0F1 ATP synthase subunit beta -
  N2A93_RS03840 (N2A93_03840) - 720563..720979 (+) 417 WP_003106500.1 F0F1 ATP synthase subunit epsilon -
  N2A93_RS03845 (N2A93_03845) - 721105..721341 (+) 237 WP_003105566.1 DUF1146 family protein -
  N2A93_RS03850 (N2A93_03850) murA 721406..722677 (+) 1272 WP_003106507.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  N2A93_RS03855 (N2A93_03855) - 722681..722869 (+) 189 WP_003104489.1 DNA-directed RNA polymerase subunit beta -
  N2A93_RS03860 (N2A93_03860) endA 722900..723769 (+) 870 WP_003104439.1 DNA/RNA non-specific endonuclease Machinery gene
  N2A93_RS03865 (N2A93_03865) pheS 724045..725088 (+) 1044 WP_003106509.1 phenylalanine--tRNA ligase subunit alpha -
  N2A93_RS03870 (N2A93_03870) - 725174..725698 (+) 525 WP_003105886.1 N-acetyltransferase -
  N2A93_RS03875 (N2A93_03875) pheT 725713..728118 (+) 2406 WP_003106512.1 phenylalanine--tRNA ligase subunit beta -
  N2A93_RS03880 (N2A93_03880) - 728295..728540 (+) 246 WP_238570159.1 PfkB family carbohydrate kinase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31919.62 Da        Isoelectric Point: 9.7755

>NTDB_id=727250 N2A93_RS03860 WP_003104439.1 722900..723769(+) (endA) [Streptococcus parauberis strain KSP14]
MSNHNSKNWKNIGSLILLIFVLAGSYLSKNDVISDNNPIKQIYQSVTGESDGKPFTKDNNNPDTPSKAQALTVMTSHVKN
QLVGKITWNGAGAFIINNNKTNLNAKVSSAPYANNQIKYVQGRKVPLVANALLAKSTRQYQNRNETGNGYTNWKPAGWHQ
LHGLLGEYDHAVDRGHLLGYAIVGGLKGFDASTSNPSNIATQLSWANQAADEDSTGQNYYETLIRHALDQNKRVRYRVTL
VYEGNNILSKGSHLEAKSDDGSLEFNVFIPNIQKGIKVNYQTGQVDIER

Nucleotide


Download         Length: 870 bp        

>NTDB_id=727250 N2A93_RS03860 WP_003104439.1 722900..723769(+) (endA) [Streptococcus parauberis strain KSP14]
ATGTCAAATCACAATTCCAAAAATTGGAAAAATATAGGTAGTCTTATCTTGCTAATTTTCGTTCTAGCAGGTTCCTATCT
AAGTAAGAACGATGTCATTTCGGATAATAATCCGATTAAACAAATCTATCAATCAGTAACCGGTGAAAGTGATGGAAAGC
CTTTTACCAAGGACAATAATAACCCTGATACACCAAGTAAAGCTCAAGCATTGACGGTAATGACTAGTCATGTTAAAAAT
CAATTAGTTGGTAAAATTACATGGAACGGTGCGGGTGCTTTTATTATCAATAATAACAAAACAAATTTAAATGCTAAGGT
GTCTAGTGCCCCTTATGCTAATAATCAAATTAAATATGTACAAGGTCGAAAAGTGCCACTTGTCGCAAATGCCTTATTAG
CAAAGTCAACAAGACAATATCAAAATCGTAATGAAACAGGTAATGGTTACACCAATTGGAAACCTGCCGGATGGCATCAA
TTACATGGTTTGTTGGGGGAATATGACCATGCGGTGGACAGAGGTCACCTGTTAGGCTATGCCATAGTTGGTGGACTTAA
GGGGTTTGATGCCTCAACGAGTAACCCAAGCAACATAGCAACGCAATTATCATGGGCTAATCAAGCAGCAGATGAAGATT
CAACTGGTCAAAACTATTATGAGACGCTAATACGACATGCACTTGATCAAAATAAGCGTGTGCGCTATCGTGTAACTTTA
GTTTATGAAGGGAACAATATTTTATCTAAAGGAAGTCATTTGGAAGCAAAATCTGATGATGGAAGCTTAGAATTTAATGT
GTTCATTCCAAATATTCAAAAAGGAATAAAAGTCAATTATCAGACTGGTCAGGTCGATATAGAACGCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(92-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

63.717

78.201

0.498
  endA Streptococcus pneumoniae D39

63.717

78.201

0.498
  endA Streptococcus pneumoniae R6

63.717

78.201

0.498
  endA Streptococcus pneumoniae TIGR4

63.717

78.201

0.498