Detailed information NTG0726896

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: P1K87_RS12705
• Genome accession: NZ_CP119596
• Coordinates: 2613745..2615013 (+)
• Length: 422 a.a.
• NCBI ID: WP_029326053.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MG-2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2608745..2620013

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P1K87_RS12685 (P1K87_12685)	-	2610116..2610766 (-)	651	WP_032873859.1	tetratricopeptide repeat protein	-
P1K87_RS12690 (P1K87_12690)	mnmA	2610824..2611939 (-)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
P1K87_RS12695 (P1K87_12695)	-	2611976..2613115 (-)	1140	WP_032873857.1	cysteine desulfurase family protein	-
P1K87_RS12700 (P1K87_12700)	cymR	2613134..2613550 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
P1K87_RS12705 (P1K87_12705)	rarA	2613745..2615013 (+)	1269	WP_029326053.1	replication-associated recombination protein A	Machinery gene
P1K87_RS12710 (P1K87_12710)	-	2615128..2615892 (-)	765	WP_032873855.1	tRNA threonylcarbamoyladenosine dehydratase	-
P1K87_RS12720 (P1K87_12720)	aspS	2616218..2617996 (-)	1779	WP_032873853.1	aspartate--tRNA ligase	-
P1K87_RS12725 (P1K87_12725)	hisS	2618011..2619285 (-)	1275	WP_032873851.1	histidine--tRNA ligase	-
P1K87_RS12730 (P1K87_12730)	-	2619642..2619812 (-)	171	WP_087920774.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46646.54 Da
• Isoelectric Point: 8.5446

>NTDB_id=726896 P1K87_RS12705 WP_029326053.1 2613745..2615013(+) (rarA) [Bacillus amyloliquefaciens strain MG-2]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALKR
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTVRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=726896 P1K87_RS12705 WP_029326053.1 2613745..2615013(+) (rarA) [Bacillus amyloliquefaciens strain MG-2]
ATGAAACCACTGGCGTATCGGATGCGGCCTGCCAATATTGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACATCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGTACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGAAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCTTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCACAAGG
GTGCGGGGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGG
TCCGGATTACACGGGAAACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGAGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGAACGGGTAA
AATCGGCGATGTGCCGAAACATCTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCTCACGATTTCGAAAACGGATGGGTCGAACAGCAATATTTGCCCGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.736	99.763	0.905