Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NZD48_RS06000 Genome accession   NZ_CP103964
Coordinates   1242260..1244632 (+) Length   790 a.a.
NCBI ID   WP_259490560.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain MM2101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1237260..1249632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NZD48_RS05980 (NZD48_05980) - 1238058..1239065 (-) 1008 WP_259490553.1 LLM class flavin-dependent oxidoreductase -
  NZD48_RS05985 (NZD48_05985) - 1239287..1240426 (+) 1140 WP_259490555.1 cysteine desulfurase family protein -
  NZD48_RS05990 (NZD48_05990) mnmA 1240429..1241541 (+) 1113 WP_259490557.1 tRNA 2-thiouridine(34) synthase MnmA -
  NZD48_RS05995 (NZD48_05995) - 1241582..1242256 (+) 675 WP_259490559.1 tetratricopeptide repeat protein -
  NZD48_RS06000 (NZD48_06000) recD2 1242260..1244632 (+) 2373 WP_259490560.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NZD48_RS06005 (NZD48_06005) alaS 1244864..1247494 (+) 2631 WP_259490654.1 alanine--tRNA ligase -
  NZD48_RS06010 (NZD48_06010) - 1247558..1247830 (+) 273 WP_039645438.1 IreB family regulatory phosphoprotein -
  NZD48_RS06015 (NZD48_06015) ruvX 1247823..1248251 (+) 429 WP_039645440.1 Holliday junction resolvase RuvX -
  NZD48_RS06020 (NZD48_06020) - 1248266..1248586 (+) 321 WP_039645442.1 DUF1292 domain-containing protein -
  NZD48_RS06025 (NZD48_06025) - 1248851..1249495 (+) 645 WP_252538844.1 O-methyltransferase -

Sequence

Protein


Download         Length: 790 a.a.        Molecular weight: 89550.12 Da        Isoelectric Point: 4.7276

>NTDB_id=726649 NZD48_RS06000 WP_259490560.1 1242260..1244632(+) (recD2) [Staphylococcus hyicus strain MM2101]
MENPTLFEQSYIKGNIDVILFQNSDNYYTVLKVDVEDSNEDFDNMATVVGYFPNIVEGETYTFKGQVAEHPRYGKQLKAE
TFQKEIPQTREAIIQYLSSDLFKGVGKKTAESIVDTLGDHAIQSILKDATVLEQVPKLSKAKQQQIADQVYQNQESEQIM
IRLNELGFGAKLAMDIYKFYKVDTLKIIDENPYQLVYDIRGVGFQKADQLARLIGISYTHPNRLKAGIQYIIEEICIKQG
HTYLPKDALMKESSVLLTKQNETTIDSAMLEDVFMQLIDEKRLVDDDEHIAIPSLFYSELKSSQNVYKLMNNNVCLDTFD
QSDIQMHIGEIEETHGVSYAEAQKEALEAAMKNKMMILTGGPGTGKTTVIKGIVHLYATLHGISLNYDDYGDEDYPVVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQDTKPEDILDHAIHAKLIIIDEMSMVDTWLFHQFMAAVPEDAQVVLVGDEDQ
LPSVGPGQVFRDLITSKALPRINLTEVYRQQDGSSIIELAHKMKAGLNVDITERFHDRSFIPCHIDQIPEVVRKVVTNAV
KKGYDMSDIQVLAPMYRGNAGIHKLNKVLQDILNPIEDDDTREIQFGDVVYRKGDKVLQLVNRPNDNIFNGDIGVIVGIF
WAKENALNKDVVIVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLVF
LGDADAFNIGIKTEGQVRLTRQQMFLEQYFNTDSETNQPVQLTEETMFKIDPMINMKNVSPYDFMEIDNV

Nucleotide


Download         Length: 2373 bp        

>NTDB_id=726649 NZD48_RS06000 WP_259490560.1 1242260..1244632(+) (recD2) [Staphylococcus hyicus strain MM2101]
GTGGAAAACCCAACACTATTTGAACAGTCATATATTAAAGGCAACATCGATGTCATTCTCTTTCAAAATAGTGATAATTA
TTACACTGTCCTGAAAGTAGACGTTGAAGATTCGAATGAAGACTTCGACAATATGGCTACAGTTGTTGGGTATTTTCCAA
ATATCGTTGAAGGTGAGACGTATACGTTTAAGGGGCAAGTTGCAGAACATCCCCGTTATGGCAAGCAATTAAAGGCTGAA
ACGTTTCAAAAAGAAATACCTCAAACAAGAGAGGCTATCATACAATATTTATCAAGTGATTTATTTAAGGGTGTTGGAAA
AAAAACTGCTGAATCTATCGTAGATACATTAGGTGATCATGCCATTCAATCAATTTTAAAAGATGCTACAGTTCTTGAAC
AAGTTCCTAAATTATCCAAAGCCAAACAACAGCAAATTGCTGATCAAGTATATCAAAATCAAGAAAGCGAACAGATTATG
ATTCGTTTAAATGAACTTGGTTTCGGTGCAAAACTCGCCATGGATATTTATAAATTTTATAAAGTTGATACATTAAAAAT
TATAGACGAAAACCCTTACCAACTGGTATATGATATACGCGGTGTTGGATTTCAAAAAGCAGATCAACTCGCGCGCTTAA
TTGGCATTTCATATACGCATCCCAACCGATTAAAAGCTGGCATACAATACATAATTGAAGAAATATGTATCAAACAAGGG
CACACTTATTTGCCTAAAGACGCACTCATGAAAGAGTCATCTGTACTTTTAACAAAGCAAAATGAAACAACAATTGATTC
GGCAATGCTAGAAGATGTATTTATGCAACTTATAGACGAAAAACGATTAGTAGATGATGACGAACATATCGCAATTCCGA
GCTTATTTTATTCTGAATTAAAAAGTAGTCAAAATGTGTATAAACTCATGAACAATAATGTATGCCTTGATACTTTTGAT
CAATCAGATATACAGATGCATATTGGTGAAATTGAAGAGACGCATGGTGTTTCTTATGCTGAGGCCCAAAAAGAAGCGCT
AGAAGCTGCCATGAAAAATAAAATGATGATATTAACTGGTGGTCCAGGAACAGGTAAAACTACAGTTATAAAAGGGATTG
TACATCTTTATGCGACATTACATGGCATTTCTCTAAACTATGATGACTATGGTGATGAGGATTATCCTGTTGTACTTGCA
GCTCCAACTGGACGAGCTTCTAAACGACTTCATGATGCCACGGGATTAGAAGCTATGACGATACATCGATTGATAGGTTG
GAATCAAGACACAAAGCCTGAAGATATACTCGATCATGCCATTCATGCCAAATTGATTATCATTGATGAAATGTCAATGG
TCGATACTTGGCTATTCCATCAATTTATGGCGGCTGTTCCAGAAGATGCGCAAGTCGTATTGGTTGGCGATGAAGACCAG
TTACCATCTGTAGGTCCAGGTCAAGTATTTAGGGATTTAATTACCTCAAAAGCGTTGCCACGAATTAATTTAACTGAAGT
TTACCGTCAACAAGATGGATCCAGTATCATTGAATTGGCACACAAAATGAAAGCGGGGTTAAACGTAGATATAACAGAAC
GTTTCCATGATCGCTCTTTCATTCCATGTCATATTGATCAAATTCCTGAAGTCGTTCGTAAAGTGGTAACGAATGCTGTT
AAAAAGGGATATGACATGTCTGATATACAAGTGCTTGCGCCCATGTATCGTGGCAATGCGGGCATTCATAAACTTAATAA
AGTGCTTCAAGATATTCTTAATCCTATTGAAGATGACGATACACGTGAAATTCAATTTGGAGATGTCGTATATCGGAAAG
GGGATAAAGTACTTCAACTCGTTAATCGACCGAATGATAATATTTTTAATGGTGATATCGGCGTTATCGTTGGCATTTTT
TGGGCTAAAGAGAATGCCCTTAATAAGGACGTTGTCATTGTGGATTATGAAGGCAATGAGATCACATATTTAAAATCAGA
TTTAACGGAATTGACACATGCATATTGTACCTCTATCCATAAAGCGCAAGGTTCTGAGTTCCCAATTGTTATTATGCCAA
TCGTTAAACAATATTTTAGAATGCTCCAAAAACCAATCCTTTATACAGGACTAACACGAGCAAAACAATCACTTGTGTTT
TTAGGTGACGCAGATGCATTTAATATAGGAATAAAAACGGAAGGGCAAGTGAGATTAACACGTCAGCAAATGTTTCTCGA
GCAATACTTCAACACGGATTCAGAAACAAATCAACCTGTGCAACTTACTGAAGAGACGATGTTTAAAATAGATCCAATGA
TTAATATGAAAAATGTAAGCCCCTATGATTTTATGGAAATTGACAATGTTTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-544)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.505

100

0.506