Detailed information NTG0726587

Bioinformatically predicted

Overview

• Name: rcrQ
• Type: Regulator
• Locus tag: NYR34_RS06660
• Genome accession: NZ_CP103951
• Coordinates: 1390894..1392753 (-)
• Length: 619 a.a.
• NCBI ID: WP_264229651.1
• Uniprot ID: -
• Organism: Acholeplasma laidlawii strain JS42
• Function: regulate competence (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1385247..1409618	1390894..1392753	within	0

Gene organization within MGE regions

Location: 1385247..1409618

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR34_RS06625	-	1385247..1385678 (-)	432	WP_404798803.1	VOC family protein	-
NYR34_RS06630	-	1385890..1387011 (-)	1122	WP_264230327.1	transposase	-
NYR34_RS06635	tnpA	1386995..1387420 (-)	426	WP_264229293.1	IS200/IS605 family transposase	-
NYR34_RS06640	-	1387520..1388047 (-)	528	WP_264229648.1	DUF2179 domain-containing protein	-
NYR34_RS06645	-	1388148..1388939 (-)	792	WP_012243164.1	ABC transporter permease	-
NYR34_RS06650	-	1388941..1389765 (-)	825	WP_264229649.1	ABC-2 family transporter protein	-
NYR34_RS06655	-	1389746..1390741 (-)	996	WP_404798804.1	ATP-binding cassette domain-containing protein	-
NYR34_RS06660	rcrQ	1390894..1392753 (-)	1860	WP_264229651.1	ABC transporter ATP-binding protein	Regulator
NYR34_RS06665	rcrP	1392746..1394515 (-)	1770	WP_264229652.1	ABC transporter ATP-binding protein	Regulator
NYR34_RS06670	-	1394518..1394946 (-)	429	WP_264229653.1	MarR family winged helix-turn-helix transcriptional regulator	-
NYR34_RS06675	-	1395158..1395472 (-)	315	WP_264229654.1	hypothetical protein	-
NYR34_RS06680	-	1395671..1398214 (+)	2544	WP_264229655.1	lamin tail domain-containing protein	-
NYR34_RS06685	-	1398267..1398938 (-)	672	WP_264229656.1	DUF2161 domain-containing phosphodiesterase	-
NYR34_RS06690	-	1399033..1399371 (-)	339	WP_264229657.1	hypothetical protein	-
NYR34_RS06695	-	1399549..1400670 (-)	1122	WP_264230327.1	transposase	-
NYR34_RS06700	tnpA	1400654..1401061 (-)	408	WP_264230341.1	IS200/IS605 family transposase	-
NYR34_RS06705	groL	1401245..1402855 (-)	1611	WP_264229658.1	chaperonin GroEL	-
NYR34_RS06710	-	1402884..1403141 (-)	258	WP_264229659.1	co-chaperone GroES	-
NYR34_RS06715	-	1403308..1404771 (-)	1464	WP_264229660.1	NAD(P)/FAD-dependent oxidoreductase	-
NYR34_RS06720	-	1404852..1406102 (-)	1251	WP_264229661.1	hypothetical protein	-
NYR34_RS06725	-	1406358..1407314 (-)	957	WP_264229662.1	DUF1295 domain-containing protein	-
NYR34_RS06730	-	1407365..1408087 (-)	723	WP_319018130.1	amino acid ABC transporter ATP-binding protein	-
NYR34_RS06735	-	1408080..1409618 (-)	1539	WP_264229663.1	transporter substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 619 a.a.
• Molecular weight: 69342.47 Da
• Isoelectric Point: 6.8957

>NTDB_id=726587 NYR34_RS06660 WP_264229651.1 1390894..1392753(-) (rcrQ) [Acholeplasma laidlawii strain JS42]
MAKEKKHDNNPAPKNPGFGHGKMGGGQKAKNFKKSFKQMLSYAKEYHVLIGIAFVLAFIGTVLNIIGPDLIKQMTNEITK
AVDFRPDQGIFPSETINMELIGRIGLTLVIFYSLGFIFNYIQGFMLTTVSQRISNRFRRDIATKMNKIPFKYYDTTNIGD
ILSRMTNDVDMVGQTYQQSFGSLVTAVTMFIGSIVMMFITNWILALTAIGASLIGFVFMMLIVTRSQKYFKTFQSKLGAL
NGHIEEIYTGHTNVKAYVAELKEVETFNQMNEDLYQSGWKSQFLSGIMMPLMGFVGNLGYVAVIIVGAILVSSGKTEFGV
ILAFLIYVRLFTQPLSTMAQAMTSLQSGTAAAERVFEFLEEKELEDESHKKLKLTNVKGEVTFDHVKFGYDEEKLVINDF
SAKIKPGQKVAIVGPTGAGKTTLVNLLMRFYELNEGRILIDGVDIKDITRENVHSLFGMVLQDTWLFEGSVYDNLVFTNK
DVTREQVESICKTVGIHFFINTLPEKYDTILTDKVNLSAGQKQLLTIARAMILNAPLLIFDEATSSIDTRTEVLIQKAMD
ELMTGRTSFVIAHRLSTIRNADLILVMKDGDIVESGNHETLLGQDGFYAELYNSQFDPK

Nucleotide

• Length: 1860 bp

>NTDB_id=726587 NYR34_RS06660 WP_264229651.1 1390894..1392753(-) (rcrQ) [Acholeplasma laidlawii strain JS42]
ATGGCTAAAGAAAAAAAACACGATAACAACCCAGCACCTAAAAATCCTGGCTTTGGTCATGGGAAAATGGGCGGTGGTCA
AAAGGCTAAAAACTTTAAAAAGTCCTTTAAACAAATGCTTAGTTATGCAAAAGAATACCATGTATTAATCGGTATTGCCT
TTGTTCTAGCATTTATTGGTACCGTATTAAATATTATTGGTCCAGACTTAATTAAACAAATGACCAATGAAATTACAAAA
GCAGTGGACTTTAGACCTGATCAAGGCATTTTCCCAAGTGAAACCATTAATATGGAACTTATTGGTCGTATCGGTCTAAC
CCTTGTAATATTCTATAGTTTAGGGTTTATCTTTAACTATATTCAAGGCTTTATGCTCACAACCGTATCTCAAAGAATAT
CCAATCGCTTTAGAAGAGATATCGCAACTAAAATGAATAAAATACCTTTTAAATATTATGACACAACAAACATTGGTGAC
ATCTTAAGTCGTATGACCAACGATGTGGACATGGTTGGTCAAACCTACCAACAATCATTTGGGTCATTAGTAACTGCAGT
AACCATGTTTATTGGTTCAATTGTCATGATGTTTATTACTAACTGGATTCTTGCATTAACTGCAATTGGGGCATCCTTAA
TTGGATTTGTCTTTATGATGTTAATTGTAACAAGATCTCAAAAATACTTTAAAACATTCCAATCTAAATTAGGTGCATTA
AATGGTCACATTGAAGAAATCTATACAGGACACACCAATGTGAAAGCATATGTTGCAGAACTTAAAGAAGTAGAAACATT
TAATCAAATGAATGAGGACTTATATCAAAGTGGATGGAAGTCCCAATTCTTATCAGGTATCATGATGCCTTTAATGGGTT
TTGTAGGTAACCTTGGTTATGTAGCAGTGATTATTGTTGGTGCTATCTTAGTATCAAGTGGTAAAACAGAGTTTGGTGTC
ATCTTAGCATTTTTAATTTATGTTAGATTATTTACTCAACCACTATCAACTATGGCTCAAGCAATGACTTCTCTACAATC
GGGTACAGCTGCTGCTGAACGTGTATTTGAATTCTTAGAAGAAAAAGAGTTAGAAGATGAATCTCATAAGAAACTTAAAC
TTACCAATGTCAAAGGTGAAGTTACCTTTGACCATGTTAAGTTTGGTTATGATGAAGAAAAATTAGTCATTAACGATTTT
TCTGCTAAGATTAAACCTGGTCAAAAGGTTGCAATTGTTGGTCCCACTGGTGCTGGTAAAACAACCCTTGTCAATCTACT
CATGCGCTTTTATGAATTAAACGAAGGACGCATCTTAATTGATGGTGTAGATATTAAAGATATCACACGTGAAAATGTAC
ATAGTCTATTTGGTATGGTCTTACAAGATACTTGGTTATTTGAAGGTAGCGTATATGATAACTTAGTATTTACTAATAAA
GATGTAACTAGAGAACAAGTAGAATCTATTTGTAAAACTGTTGGTATTCATTTCTTCATTAATACCCTCCCAGAAAAATA
TGATACGATCTTAACAGATAAGGTCAACCTATCTGCAGGACAAAAACAATTATTAACAATTGCTCGTGCAATGATTTTAA
ATGCACCGCTACTGATCTTTGATGAAGCAACTTCATCCATTGATACAAGAACAGAAGTATTAATTCAAAAAGCAATGGAT
GAATTAATGACTGGTCGTACATCATTTGTGATTGCACACCGTCTATCTACCATTAGAAATGCTGATTTAATCTTAGTGAT
GAAAGATGGCGACATTGTAGAAAGTGGAAACCATGAGACACTTCTAGGTCAAGATGGCTTCTATGCTGAACTTTACAATT
CACAGTTTGATCCAAAATAA

Domains

Predicted by InterproScan.

• ABC transporter transmembrane region (ABC_membrane) (51-335)

• ABC transporter (ABC_tran) (398-545)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rcrQ	Streptococcus mutans UA159	54.422	94.992	0.517