Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   P1T45_RS09715 Genome accession   NZ_CP119427
Coordinates   1826017..1828353 (-) Length   778 a.a.
NCBI ID   WP_037620053.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1821017..1833353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS09690 (P1T45_09695) rpsR 1821853..1822092 (-) 240 WP_003102945.1 30S ribosomal protein S18 -
  P1T45_RS09695 (P1T45_09700) ssb 1822181..1822678 (-) 498 WP_003103409.1 single-stranded DNA-binding protein Machinery gene
  P1T45_RS09700 (P1T45_09705) rpsF 1822699..1822989 (-) 291 WP_003104479.1 30S ribosomal protein S6 -
  P1T45_RS09705 (P1T45_09710) mutY 1823975..1825114 (+) 1140 WP_037620052.1 A/G-specific adenine glycosylase -
  P1T45_RS09710 (P1T45_09715) trxA 1825595..1825909 (-) 315 WP_003102914.1 thioredoxin -
  P1T45_RS09715 (P1T45_09720) mutS/mutS2 1826017..1828353 (-) 2337 WP_037620053.1 endonuclease MutS2 Machinery gene
  P1T45_RS09720 (P1T45_09725) - 1828420..1828965 (-) 546 WP_003104122.1 CvpA family protein -
  P1T45_RS09725 (P1T45_09730) zapA 1828968..1829276 (-) 309 WP_003105645.1 cell division protein ZapA -
  P1T45_RS09730 (P1T45_09735) rnhC 1829395..1830309 (+) 915 WP_037620056.1 ribonuclease HIII -
  P1T45_RS09735 (P1T45_09740) lepB 1830318..1830911 (+) 594 WP_003103516.1 signal peptidase I -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87675.51 Da        Isoelectric Point: 6.6679

>NTDB_id=726414 P1T45_RS09715 WP_037620053.1 1826017..1828353(-) (mutS/mutS2) [Streptococcus parauberis strain KSP45]
MDIKILEQLEFQKVKEQFQTYLQTEQGKVELQQLVPTDNPEKIKDYFTEISEMEMIFIENHHFAMGSLRDVNDSLHRLEL
DADLNISELLDIKKLLLVSSEASRFFMNLENVELVALKKLFEKLEIFPQLQGSLQAINDGAFIENFASPELEAIRRKIFN
SEHQIRQSLQDVLKKHADYLSESLIASRNGRSVLPVKNTFRNKIAGVVHDISASGNTVYIEPRALVQLNEEITQLHADER
HEMARILKELSAMVRPHSRALANNAWLLGHLDFVRAKYLYMKEKKATIPTVTADKSVQLLNVRHPLLQKPVPNDLHFSKD
LTVIVITGPNTGGKTIMLKTLGLAQLMGQSGLPILADYGSKIAVFNGIFADIGDEQSIEQSLSTFSSHMTHIVSILDQAT
ADSLVLFDELGAGTDPQEGASLAMAILEELRLKEIKTMATTHYPELKAYGIESEFVENASMEFDSNSLQPTYRFMQGVPG
RSNAFEIARRLGLAGHIVTDAQNFTDTDSDVNRIIEKLESQTLESRKRLEHIKEVEQDNLKFNRAVKKLYNEFSHERDKE
MEKVTKEAQEIVDLALAESESILAKLHDKSQLKPHEVIEAKTQLKKLVPQTDLSKNKVLKQAKKLRAARVGDDIIVSAYG
QRGTLINQLKDQKWEAQVGLIKMTLKEDEFTLVKAVEESQKPKKQMVNVIKKAATGSGPRARLDLRGKRYEEAMQELDTF
IDQALVNNMSQVDIIHGIGTGVIREAVTKYLRRNKHVKSFAYAPQNAGGSGCTIVTFG

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=726414 P1T45_RS09715 WP_037620053.1 1826017..1828353(-) (mutS/mutS2) [Streptococcus parauberis strain KSP45]
ATGGATATAAAAATTTTAGAACAGTTAGAATTTCAAAAGGTTAAAGAACAATTTCAAACCTACCTTCAAACTGAACAAGG
GAAAGTGGAACTCCAACAGCTAGTTCCAACAGACAATCCCGAAAAGATTAAAGATTATTTTACGGAAATTTCAGAAATGG
AGATGATTTTCATTGAAAATCATCATTTTGCCATGGGAAGCTTACGGGATGTTAATGACAGCCTCCACCGCCTTGAGTTG
GATGCTGATTTGAATATTTCGGAACTCTTAGATATCAAAAAACTCTTGCTTGTCTCTTCCGAAGCCAGTCGTTTTTTTAT
GAATTTAGAAAATGTTGAATTGGTTGCCCTAAAAAAATTATTTGAGAAATTAGAAATTTTTCCTCAGTTGCAGGGAAGCC
TGCAAGCCATCAACGATGGGGCCTTCATAGAAAACTTTGCCAGTCCAGAATTGGAAGCCATCCGTCGCAAGATTTTTAAT
AGTGAACACCAAATTCGTCAATCGCTTCAGGATGTGCTCAAGAAACATGCTGACTATCTGTCAGAATCATTGATTGCCAG
TCGGAACGGCCGTAGCGTGCTTCCGGTTAAAAACACCTTTAGAAACAAAATCGCAGGGGTTGTCCACGATATCTCAGCAT
CTGGGAATACAGTCTATATTGAACCACGAGCTTTGGTCCAATTAAATGAAGAAATAACCCAGTTGCATGCTGATGAACGT
CATGAAATGGCACGGATTCTTAAAGAACTCTCAGCCATGGTTCGTCCACATAGTCGTGCTCTTGCCAATAATGCTTGGTT
ACTAGGACATTTAGATTTTGTTCGAGCAAAATATCTTTATATGAAGGAGAAGAAGGCGACTATTCCAACTGTCACTGCTG
ATAAATCAGTGCAATTGTTGAATGTTCGTCATCCTCTCTTGCAAAAGCCAGTTCCTAATGACCTACACTTTTCTAAAGAC
TTAACAGTTATTGTTATTACGGGTCCTAATACGGGTGGTAAGACAATCATGTTAAAAACCCTTGGTTTGGCTCAGTTAAT
GGGACAGTCTGGTTTGCCAATTCTAGCTGACTACGGTTCTAAGATTGCTGTTTTCAATGGAATTTTTGCTGATATTGGCG
ATGAGCAATCGATTGAACAAAGCTTGTCGACCTTCTCTAGTCATATGACCCACATTGTGTCAATTCTTGACCAAGCGACA
GCAGATAGTCTAGTTCTCTTTGATGAACTAGGTGCTGGTACCGATCCGCAAGAAGGTGCTAGCTTAGCGATGGCCATTCT
AGAAGAACTTCGCTTGAAAGAAATCAAGACCATGGCGACGACCCATTATCCTGAGTTGAAAGCTTACGGGATTGAGTCGG
AGTTTGTTGAAAATGCTAGTATGGAGTTTGATAGTAATAGTCTTCAGCCAACCTATCGTTTTATGCAAGGCGTGCCTGGT
CGTTCTAATGCTTTTGAAATTGCAAGACGGTTGGGCCTTGCCGGTCATATTGTGACGGACGCTCAGAATTTTACTGATAC
GGATAGTGACGTCAATCGGATTATTGAAAAGTTAGAAAGTCAGACTTTGGAGAGTCGGAAACGTCTTGAACATATTAAAG
AGGTCGAGCAGGATAACCTTAAGTTCAATCGTGCTGTTAAAAAGCTGTATAATGAGTTTTCTCATGAGCGTGATAAGGAA
ATGGAAAAGGTTACTAAAGAGGCGCAAGAGATAGTTGATTTGGCCTTGGCGGAAAGTGAGTCTATCTTAGCTAAGTTACA
TGACAAGTCGCAATTGAAACCACATGAAGTCATTGAAGCTAAGACACAATTGAAAAAGTTAGTACCTCAAACTGATTTAT
CCAAAAATAAAGTTTTGAAACAGGCTAAGAAGTTAAGAGCTGCGCGTGTTGGTGATGATATCATTGTTTCTGCATATGGT
CAACGTGGTACTTTAATTAATCAATTAAAAGATCAAAAATGGGAAGCACAAGTGGGGTTAATTAAAATGACCCTCAAAGA
GGATGAATTTACCTTGGTTAAGGCTGTTGAAGAAAGCCAGAAACCTAAAAAACAAATGGTTAATGTCATTAAGAAAGCAG
CAACAGGTTCTGGACCTAGAGCCCGTCTTGACTTACGTGGCAAACGTTATGAAGAAGCCATGCAAGAGCTGGATACCTTT
ATTGACCAAGCTTTAGTTAATAACATGAGTCAAGTTGATATCATTCATGGGATTGGTACTGGGGTTATTCGTGAAGCAGT
TACTAAATATTTGAGACGCAACAAACATGTTAAGAGTTTTGCTTACGCTCCGCAAAATGCGGGAGGGTCAGGTTGTACAA
TTGTGACATTTGGTTAG

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(630-669)

MutS domain V (MutS_V)

(324-505)

Smr domain (Smr)

(703-777)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.263

100

0.397