Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PKHYL_RS01835 Genome accession   NZ_AP019516
Coordinates   352661..352810 (+) Length   49 a.a.
NCBI ID   WP_240365842.1    Uniprot ID   -
Organism   Psychrobacter sp. KH172YL61     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347661..357810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PKHYL_RS01810 (PKHYL_04200) - 347690..348385 (+) 696 WP_240365838.1 sulfite exporter TauE/SafE family protein -
  PKHYL_RS01815 (PKHYL_04210) - 348382..349239 (+) 858 WP_240365839.1 thioredoxin domain-containing protein -
  PKHYL_RS01820 (PKHYL_04220) - 349607..351019 (+) 1413 WP_240365840.1 phospholipase A -
  PKHYL_RS01825 (PKHYL_04230) - 351072..351896 (+) 825 WP_240365841.1 ComF family protein -
  PKHYL_RS01830 (PKHYL_04250) - 352164..352661 (+) 498 WP_227674181.1 GspH/FimT family pseudopilin -
  PKHYL_RS01835 pilV 352661..352810 (+) 150 WP_240365842.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  PKHYL_RS01840 (PKHYL_04260) - 352935..353225 (+) 291 WP_240365843.1 hypothetical protein -
  PKHYL_RS01845 (PKHYL_04270) - 353225..353782 (+) 558 WP_240365844.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PKHYL_RS01850 (PKHYL_04280) - 353734..354204 (+) 471 WP_240365845.1 PilW family protein -
  PKHYL_RS01855 (PKHYL_04300) - 354462..354935 (+) 474 WP_240365846.1 hypothetical protein -
  PKHYL_RS17025 - 354965..355099 (+) 135 WP_269778218.1 hypothetical protein -
  PKHYL_RS01860 (PKHYL_04310) - 355132..355998 (+) 867 WP_240365847.1 hypothetical protein -

Sequence

Protein


Download         Length: 49 a.a.        Molecular weight: 5288.48 Da        Isoelectric Point: 9.2027

>NTDB_id=72636 PKHYL_RS01835 WP_240365842.1 352661..352810(+) (pilV) [Psychrobacter sp. KH172YL61]
MKNINNQYGVGLVEVLVALLLLAVAVLGFSAMQMTAVKLLMKASCVREH

Nucleotide


Download         Length: 150 bp        

>NTDB_id=72636 PKHYL_RS01835 WP_240365842.1 352661..352810(+) (pilV) [Psychrobacter sp. KH172YL61]
ATGAAAAACATCAATAACCAGTATGGAGTGGGCTTAGTAGAGGTGCTAGTGGCACTGTTACTATTAGCAGTTGCAGTGCT
TGGGTTTTCAGCTATGCAAATGACTGCTGTAAAGCTACTGATGAAAGCCTCATGCGTACGCGAGCATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baylyi ADP1

61.364

89.796

0.551
  pilV Acinetobacter baumannii D1279779

56.757

75.51

0.429

Multiple sequence alignment