Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NX081_RS08585 Genome accession   NZ_CP103856
Coordinates   1692928..1693707 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SRCM116265     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1687928..1698707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX081_RS08565 (NX081_08565) trmFO 1688615..1689922 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NX081_RS08570 (NX081_08570) xerC 1689992..1690909 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  NX081_RS08575 (NX081_08575) hslV 1690925..1691470 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  NX081_RS08580 (NX081_08580) hslU 1691487..1692890 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  NX081_RS08585 (NX081_08585) codY 1692928..1693707 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NX081_RS08590 (NX081_08590) flgB 1694061..1694450 (+) 390 WP_060561695.1 flagellar basal body rod protein FlgB -
  NX081_RS08595 (NX081_08595) flgC 1694450..1694902 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  NX081_RS08600 (NX081_08600) fliE 1694913..1695233 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  NX081_RS08605 (NX081_08605) fliF 1695276..1696886 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  NX081_RS08610 (NX081_08610) fliG 1696899..1697915 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NX081_RS08615 (NX081_08615) fliH 1697908..1698663 (+) 756 WP_060561694.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=726082 NX081_RS08585 WP_003154263.1 1692928..1693707(+) (codY) [Bacillus velezensis strain SRCM116265]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=726082 NX081_RS08585 WP_003154263.1 1692928..1693707(+) (codY) [Bacillus velezensis strain SRCM116265]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGTATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCACGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGATCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGAACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471