Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KCTCHS21_RS30580 Genome accession   NZ_AP019400
Coordinates   7039867..7040370 (-) Length   167 a.a.
NCBI ID   WP_130616253.1    Uniprot ID   A0A3T1DFB3
Organism   Cohnella abietis strain KCTC 43028     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7034867..7045370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCTCHS21_RS30560 (KCTCHS21_61780) - 7036841..7037281 (-) 441 WP_130616249.1 CBS domain-containing protein -
  KCTCHS21_RS30565 (KCTCHS21_61790) - 7037511..7038509 (-) 999 WP_130616250.1 LCP family protein -
  KCTCHS21_RS30570 (KCTCHS21_61800) - 7038818..7039435 (+) 618 WP_130616251.1 hypothetical protein -
  KCTCHS21_RS30575 (KCTCHS21_61810) rpsR 7039499..7039846 (-) 348 WP_130616252.1 30S ribosomal protein S18 -
  KCTCHS21_RS30580 (KCTCHS21_61820) ssbA 7039867..7040370 (-) 504 WP_130616253.1 single-stranded DNA-binding protein Machinery gene
  KCTCHS21_RS30585 (KCTCHS21_61830) rpsF 7040437..7040724 (-) 288 WP_130616254.1 30S ribosomal protein S6 -
  KCTCHS21_RS30590 (KCTCHS21_61840) - 7040903..7041091 (+) 189 WP_130616255.1 YjzC family protein -
  KCTCHS21_RS30595 (KCTCHS21_61850) - 7041424..7042137 (-) 714 WP_130616256.1 N-acetylmuramoyl-L-alanine amidase -
  KCTCHS21_RS30600 (KCTCHS21_61860) - 7042275..7043678 (-) 1404 WP_130616257.1 hypothetical protein -
  KCTCHS21_RS30605 (KCTCHS21_61870) - 7044107..7044313 (+) 207 WP_130616258.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18203.87 Da        Isoelectric Point: 4.8620

>NTDB_id=72606 KCTCHS21_RS30580 WP_130616253.1 7039867..7040370(-) (ssbA) [Cohnella abietis strain KCTC 43028]
MLNRVILIGRLTKDPELRYTPAGVAVTQFTLAVDRQFSGSKEEREADFIPIVTWRQLAETCANYLRKGRLAAVEGRLQVR
NYENNEGRRVYVTEVIADNVRFLESANREGGSQGRDEGAGGNSNTSGGGYGGGNRSSGSRNSGSNNNSDPFADDGRPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=72606 KCTCHS21_RS30580 WP_130616253.1 7039867..7040370(-) (ssbA) [Cohnella abietis strain KCTC 43028]
ATGTTAAATAGAGTTATTCTCATAGGACGTTTAACCAAGGATCCCGAATTGCGCTATACGCCTGCTGGCGTTGCTGTTAC
TCAGTTTACTTTAGCGGTAGACCGTCAGTTCTCTGGTAGTAAAGAAGAGCGCGAAGCGGATTTTATCCCGATTGTAACTT
GGAGACAGTTAGCCGAGACGTGTGCCAATTATCTTCGTAAAGGCCGTTTGGCCGCCGTAGAAGGGCGCTTACAAGTGCGT
AACTACGAGAACAACGAAGGCCGACGCGTATATGTAACGGAAGTCATTGCCGATAATGTTCGATTCCTTGAGTCAGCCAA
CCGCGAGGGCGGCAGTCAGGGAAGAGACGAGGGTGCAGGTGGCAACTCGAACACAAGTGGAGGCGGGTACGGAGGCGGCA
ACCGCAGCTCTGGCTCTCGCAACAGCGGAAGTAACAATAACAGTGATCCCTTCGCCGATGACGGGCGACCGATAGATATA
TCGGACGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T1DFB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.593
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.527
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

67.066

0.365

Multiple sequence alignment