Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NYR94_RS06640 Genome accession   NZ_CP103847
Coordinates   1603661..1604062 (+) Length   133 a.a.
NCBI ID   WP_023904776.1    Uniprot ID   A0AAU0BDV7
Organism   Xanthomonas hortorum pv. pelargonii strain 22-315     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1598661..1609062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR94_RS06620 (NYR94_06620) tsaB 1600303..1601025 (+) 723 WP_168958159.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  NYR94_RS06625 - 1601178..1601371 (-) 194 Protein_1308 hypothetical protein -
  NYR94_RS06630 (NYR94_06625) - 1601602..1602477 (-) 876 WP_168958160.1 energy transducer TonB -
  NYR94_RS06635 (NYR94_06630) gshB 1602474..1603424 (-) 951 WP_168958161.1 glutathione synthase -
  NYR94_RS06640 (NYR94_06635) pilG 1603661..1604062 (+) 402 WP_023904776.1 twitching motility response regulator PilG Regulator
  NYR94_RS06645 (NYR94_06640) - 1604080..1604442 (+) 363 WP_006450735.1 response regulator -
  NYR94_RS06650 (NYR94_06645) - 1604442..1604972 (+) 531 WP_006450736.1 chemotaxis protein CheW -
  NYR94_RS06655 (NYR94_06650) - 1605012..1607048 (+) 2037 WP_023904775.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14690.07 Da        Isoelectric Point: 7.1350

>NTDB_id=725952 NYR94_RS06640 WP_023904776.1 1603661..1604062(+) (pilG) [Xanthomonas hortorum pv. pelargonii strain 22-315]
MSEHIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=725952 NYR94_RS06640 WP_023904776.1 1603661..1604062(+) (pilG) [Xanthomonas hortorum pv. pelargonii strain 22-315]
ATGAGTGAACACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTCATCGACGATTCGAAGACTATTCGCCG
CACCGCCGAAACGCTGCTCAAGCGAGAAGGGTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CAGACCAGCAACCTCAGATCATTTTTGTCGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAGTCGACGCCGGTGATCATGTTGTCGTCCAAGGATGGCCTGTTCGACAAGGCGCGCGGCCGCAT
CGTCGGCTCCGAGCAATATCTGACCAAGCCATTCACCCGTGAAGAACTACTGAGCGCGATTCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684