Detailed information NTG0725866

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NYR95_RS17050
• Genome accession: NZ_CP103837
• Coordinates: 3911741..3913135 (+)
• Length: 464 a.a.
• NCBI ID: WP_316692646.1
• Uniprot ID: -
• Organism: Xanthomonas dyei strain 22-321
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3906741..3918135

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR95_RS17030 (NYR95_17015)	sucD	3907325..3908200 (-)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
NYR95_RS17035 (NYR95_17020)	sucC	3908225..3909394 (-)	1170	WP_316687910.1	ADP-forming succinate--CoA ligase subunit beta	-
NYR95_RS17040 (NYR95_17025)	-	3909627..3911243 (+)	1617	WP_228325307.1	PAS domain-containing sensor histidine kinase	-
NYR95_RS17050 (NYR95_17035)	pilR	3911741..3913135 (+)	1395	WP_316692646.1	sigma-54 dependent transcriptional regulator	Regulator
NYR95_RS17055 (NYR95_17040)	pilB	3913454..3915187 (-)	1734	WP_316687911.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NYR95_RS17060 (NYR95_17045)	-	3915342..3916193 (+)	852	WP_316687912.1	glycosyltransferase family 2 protein	-
NYR95_RS17065 (NYR95_17050)	-	3916245..3917105 (+)	861	WP_316687913.1	glycosyltransferase family 2 protein	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50160.58 Da
• Isoelectric Point: 6.5837

>NTDB_id=725866 NYR95_RS17050 WP_316692646.1 3911741..3913135(+) (pilR) [Xanthomonas dyei strain 22-321]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=725866 NYR95_RS17050 WP_316692646.1 3911741..3913135(+) (pilR) [Xanthomonas dyei strain 22-321]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAGCAACCCCTACGACCTGTGCCTGA
CCGACATGCGGCTGCCCGACGGCAACGGCATCGAACTGGTTACCGAAATCGCAAAGCACTATCCGCAAACGCCGGTCGCC
ATGATCACCGCGTTCGGCAGCATGGATCTGGCGGTGGAGGCCTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGTGTGCTGCGCGGCCTGGTAAAGCACGCGCTGGAACTGAACAACCGCGACCGCCCTGCACCGCCCGCGCCGC
CGCCCGAACAAGCCAGCCGTCTGCTCGGCGATTCGACCGCAATGGAGAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTGTATATCGTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTGGCACGCACCATCCACGAGCAAGGCGC
CCGCGCCGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AAAAGGGCAGCTTCACCGGGGCGCATGCCGACAAACCCGGCCTGTTCCAGGCCGCGCACGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAATTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCCGGCGAAACGCTGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TCCGGCATGACCTTTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATCGCGCGCCTGGCGCGCAGCCACGGCCGGCCGATTCCACTGCTGACCCAATCAGCCCTGGA
CGCGCTGAATACTTACGGCTTTCCGGGCAACGTCCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTACCCGCTCACGGCGGCCACCGCCTAGCCGCGACGCCCGGCAGCGCAGCG
GTCGAACCGCGCGAAGCCGTGGTGGATATCGACCCCGCGTCGTCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCGC
CGCGATCCAGAAGGCACTGGAAGAAAACCGCTGGAACAAGACCAAAACCGCCGCGCAGCTGGGCATTACCTTTCGGGCGC
TGCGTTACAAGCTCAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-115)

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.478	99.138	0.629
pilR	Acinetobacter baumannii strain A118	48.707	100	0.487