Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PZ484_RS24315 Genome accession   NZ_CP119298
Coordinates   5225736..5226161 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain SNDPR-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5220736..5231161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ484_RS24300 pilX 5221300..5221887 (+) 588 WP_023090846.1 type 4a pilus minor pilin PilX -
  PZ484_RS24305 pilY1 5221899..5225390 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PZ484_RS24310 pilY2 5225392..5225739 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PZ484_RS24315 comF 5225736..5226161 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PZ484_RS24320 ispH 5226208..5227152 (-) 945 WP_023090847.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PZ484_RS24325 fkpB 5227238..5227678 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PZ484_RS24330 lspA 5227671..5228180 (-) 510 WP_003102615.1 signal peptidase II -
  PZ484_RS24335 ileS 5228173..5231004 (-) 2832 WP_171893920.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=725630 PZ484_RS24315 WP_003094721.1 5225736..5226161(+) (comF) [Pseudomonas aeruginosa strain SNDPR-01]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=725630 PZ484_RS24315 WP_003094721.1 5225736..5226161(+) (comF) [Pseudomonas aeruginosa strain SNDPR-01]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383