Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   PY824_RS09925 Genome accession   NZ_CP119172
Coordinates   1891670..1894147 (+) Length   825 a.a.
NCBI ID   WP_014295254.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1886670..1899147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS09905 (PY824_09905) - 1889059..1889607 (-) 549 WP_014295250.1 CvpA family protein -
  PY824_RS09910 (PY824_09910) zapA 1889610..1889918 (-) 309 WP_039671208.1 cell division protein ZapA -
  PY824_RS09915 (PY824_09915) rnhC 1890040..1890942 (+) 903 WP_039671209.1 ribonuclease HIII -
  PY824_RS09920 (PY824_09920) lepB 1890959..1891552 (+) 594 WP_014295253.1 signal peptidase I -
  PY824_RS09925 (PY824_09925) recD/recD2/recDB 1891670..1894147 (+) 2478 WP_014295254.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PY824_RS09930 (PY824_09930) - 1894382..1894885 (+) 504 WP_014295255.1 hypothetical protein -
  PY824_RS09935 (PY824_09935) dinB 1894941..1896038 (-) 1098 WP_014295256.1 DNA polymerase IV -
  PY824_RS09940 (PY824_09940) pflB 1896264..1898588 (+) 2325 WP_039671210.1 formate C-acetyltransferase -
  PY824_RS09945 (PY824_09945) - 1898648..1899085 (+) 438 WP_039671211.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 825 a.a.        Molecular weight: 92780.88 Da        Isoelectric Point: 4.4519

>NTDB_id=725460 PY824_RS09925 WP_014295254.1 1891670..1894147(+) (recD/recD2/recDB) [Streptococcus macedonicus strain SGM CIP105683]
MEYFFSGTIDRIIFENASNFFKILLLEIEDTDSDFDDFEIIVTGTIADIIEGENYTFWGELTQHPKYGEQLRVTRYERSK
PTSSGLIKYFSSDHFKGIGKKTAEKIVQLYGDNTIDKILEDPSKLDSISGLSKENKDNFLTKLKLNYGTELILAKLAEYG
LTNRVAFEIFNQYKEDSLDIIQENPYQLVEDIQGIGFKIADQLAEQLGIEADAPQRFRAALVHSLFETSIERGDTYVEAR
DLLENAITTLEEARQIELDPAAVAKELSTLIAEDKVQNVGTKIFDNTLFYAESGIKKHLTRILDTPLNQNFSDVDLQEEI
ADVEEAFGISYDDVQKHAIKEALKSKVFILTGGPGTGKTTVINGLIAAYADLHQIDLEKKDIPIILAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAIDDYLDCDLIIIDEFSMVDTWLANQLFSSISSNTQVIIVGDSDQLPSVGPGQVLADLL
KIEALPQLALTKIFRQSEDSTIVTLANQMRLGKLPADFTQKKADRSYFEASAQYIPEIIPKIVSAAVKSGIDPQEIQILA
PMYRGAAGINRLNTIIQDLLNPLKDQLSFAFGEMNFRKDDKILHLINDAELNVFNGDIGYITDLIPAKYTESKQDELYMS
FDGTEVIYPRNEWHKITLAYAISIHKSQGSEFQVVILPITRQSHRLLQRNLIYTAITRSKSKLVMLGEIAAFDYAIKNEG
AKRNTYLVQRFTSSAQEESIDLQTEISQQTSPKTDNEAEKITSPTSPQTNISKEENIQLTLDIAENEQTQTEQEPKIYRL
TEENLAFINPMIGITQADIEQFFKK

Nucleotide


Download         Length: 2478 bp        

>NTDB_id=725460 PY824_RS09925 WP_014295254.1 1891670..1894147(+) (recD/recD2/recDB) [Streptococcus macedonicus strain SGM CIP105683]
ATGGAATACTTCTTTTCTGGCACAATTGACCGTATTATTTTTGAAAATGCCAGTAATTTCTTTAAAATTTTATTGCTCGA
AATTGAGGATACCGATTCAGACTTTGATGATTTTGAAATCATTGTTACTGGAACAATTGCCGATATTATCGAGGGAGAAA
ATTATACGTTTTGGGGTGAATTAACGCAACACCCAAAATATGGCGAACAGCTCAGAGTCACACGTTACGAGCGCAGCAAA
CCAACTTCTTCTGGTCTTATTAAATATTTTTCAAGCGACCATTTCAAAGGAATTGGTAAAAAAACTGCTGAAAAAATTGT
GCAGCTTTACGGCGACAATACCATTGATAAAATCCTAGAAGACCCTAGTAAATTAGACAGTATTTCTGGGCTTTCTAAGG
AAAATAAAGACAACTTTTTAACCAAACTCAAGCTTAATTATGGTACAGAGCTCATTTTAGCCAAGTTGGCAGAGTATGGC
TTAACTAATCGTGTTGCCTTTGAAATTTTTAATCAATACAAGGAAGACAGTCTTGATATTATCCAAGAAAATCCTTATCA
ATTGGTCGAAGACATTCAAGGGATTGGGTTTAAAATCGCTGACCAACTCGCTGAACAATTAGGAATCGAAGCAGATGCCC
CTCAACGTTTTCGTGCCGCTCTCGTGCACAGTCTTTTTGAAACTTCTATTGAGCGAGGAGATACTTACGTCGAAGCGCGT
GATTTGCTTGAAAATGCCATTACCACCCTTGAAGAAGCTAGACAAATTGAGTTAGACCCCGCAGCCGTTGCCAAAGAATT
ATCAACGCTTATCGCTGAAGATAAGGTACAAAATGTCGGTACCAAAATTTTTGACAATACTCTTTTCTATGCTGAATCAG
GTATCAAAAAACACCTGACACGTATCCTTGATACGCCACTCAACCAAAACTTTTCAGATGTTGACTTGCAAGAAGAAATC
GCTGACGTTGAGGAAGCTTTCGGCATTTCTTACGATGATGTGCAAAAACATGCTATCAAAGAAGCGCTCAAGAGCAAGGT
GTTTATTTTGACTGGTGGTCCTGGCACGGGAAAAACGACTGTTATCAACGGTTTGATTGCTGCCTACGCAGACCTTCATC
AAATTGATCTTGAGAAAAAAGATATTCCTATCATCTTAGCAGCGCCAACAGGACGTGCTGCCCGCCGTATGAATGAATTA
ACAGGCTTGCCAAGTGCGACTATTCACCGCCATTTGGGGTTAAATGGTGATAACGACTACCAAGCTATTGATGACTATCT
CGACTGTGACTTGATTATCATTGATGAATTTTCAATGGTTGATACTTGGCTTGCCAATCAACTCTTTAGTTCCATTTCGT
CCAATACTCAAGTCATCATCGTTGGAGATAGTGACCAATTGCCGTCTGTCGGTCCTGGGCAAGTATTAGCTGATTTATTA
AAAATTGAAGCTCTTCCTCAACTAGCATTGACTAAAATCTTTAGACAATCGGAAGATTCAACCATTGTTACACTTGCTAA
TCAGATGAGACTTGGAAAATTACCAGCTGACTTCACACAAAAGAAAGCTGACCGTTCTTATTTTGAAGCAAGTGCACAAT
ATATCCCAGAAATAATTCCTAAAATTGTCAGCGCAGCTGTTAAGAGTGGCATTGACCCACAAGAAATACAAATTCTTGCC
CCAATGTACCGTGGCGCAGCTGGGATTAATCGACTTAATACCATTATTCAGGATTTACTTAACCCGCTTAAAGATCAACT
CTCGTTTGCCTTTGGTGAGATGAATTTCCGTAAGGATGACAAAATTCTCCACCTCATCAACGATGCTGAACTCAATGTTT
TCAATGGTGATATCGGCTATATTACAGACCTTATTCCTGCTAAATATACCGAATCCAAACAAGACGAGCTTTACATGTCT
TTTGACGGCACTGAAGTTATTTACCCTCGTAATGAATGGCATAAAATTACCCTTGCTTACGCTATATCAATCCACAAATC
ACAAGGTAGCGAATTTCAGGTTGTCATTTTGCCGATCACTCGCCAAAGTCACAGACTCTTACAACGTAACCTCATTTACA
CAGCTATCACCCGCTCTAAGAGTAAATTAGTGATGTTAGGGGAAATTGCCGCCTTTGATTACGCCATAAAAAACGAAGGC
GCTAAGCGCAACACCTATCTTGTTCAACGCTTTACAAGCTCCGCTCAAGAAGAAAGTATTGATTTACAAACTGAAATTTC
TCAACAAACATCACCTAAAACAGATAATGAAGCTGAGAAAATCACCTCTCCAACTTCTCCCCAAACAAATATTTCTAAAG
AAGAAAACATCCAACTGACACTAGATATTGCCGAAAATGAGCAAACACAAACAGAGCAAGAACCAAAAATCTATCGCTTG
ACAGAAGAAAACTTGGCATTTATCAACCCAATGATTGGCATTACCCAAGCCGACATTGAACAATTTTTTAAGAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(331-522)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-638)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.397

94.061

0.399