Detailed information NTG0072518

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: JUD77_RS06105
• Genome accession: NZ_AP024414
• Coordinates: 1240346..1241686 (+)
• Length: 446 a.a.
• NCBI ID: WP_103707998.1
• Uniprot ID: -
• Organism: Haemophilus influenzae strain TA8730
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1235346..1246686

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JUD77_RS06090 (TA8730_11520)	lrp	1236401..1236880 (+)	480	WP_005664572.1	leucine-responsive transcriptional regulator Lrp	-
JUD77_RS06095 (TA8730_11530)	-	1236882..1239650 (+)	2769	WP_071162579.1	DNA translocase FtsK	-
JUD77_RS06100 (TA8730_11540)	lolA	1239668..1240285 (+)	618	WP_071162578.1	outer membrane lipoprotein chaperone LolA	-
JUD77_RS06105 (TA8730_11550)	rarA	1240346..1241686 (+)	1341	WP_103707998.1	replication-associated recombination protein A	Machinery gene
JUD77_RS06110 (TA8730_11560)	aroA	1241769..1243067 (-)	1299	WP_114877393.1	3-phosphoshikimate 1-carboxyvinyltransferase	-
JUD77_RS06115 (TA8730_11570)	purU	1243067..1243903 (-)	837	WP_005661478.1	formyltetrahydrofolate deformylase	-
JUD77_RS06120 (TA8730_11580)	-	1243973..1244377 (-)	405	WP_005647241.1	H-NS family nucleoid-associated regulatory protein	-
JUD77_RS06125 (TA8730_11590)	-	1244820..1246340 (+)	1521	WP_071162575.1	Na+/H+ antiporter NhaC family protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50346.13 Da
• Isoelectric Point: 6.3316

>NTDB_id=72518 JUD77_RS06105 WP_103707998.1 1240346..1241686(+) (rarA) [Haemophilus influenzae strain TA8730]
MSNLNFDFAENDFRPLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMIFWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAIEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTFLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
SRVGAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Nucleotide

• Length: 1341 bp

>NTDB_id=72518 JUD77_RS06105 WP_103707998.1 1240346..1241686(+) (rarA) [Haemophilus influenzae strain TA8730]
ATGTCTAACCTCAATTTTGATTTTGCCGAAAATGATTTTCGCCCACTGGCGGCCAAGATGCGTCCAACAAATCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGTCATATTCATTCTATGA
TTTTCTGGGGCCCACCAGGTACAGGAAAAACAACGCTCGCAGAAATCATAGCACAACGTATTAATGCGGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGTATCAAAGAAATTCGTGAAGCGATTGAGCGAGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCACATTGAAGACGGAA
CCGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCGTTGCTTTCTCGTGCCAGAGTATAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTATAGAAGATCCTGAACGTGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTACTTGCCGAATATGTCAATGGAGATGCGCGATTAGCCTTGAATT
GCCTCGAATTAATGGTGGATATGGCAGATGAAACGGAAAATGGAAAGAAAATTGACCGCACTTTCTTAAAAGAAGTCTTA
GGTGAACGTCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGAGG
TTCTGCTCCAGATGCTGCGCTGTATTGGTATGCAAGAATTTTAACGGCAGGTGGAGACCCTTTATATGTCGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCGGATCCTCGTGCTATGCAAGTTGCATTGGCTGCTTGGGATTGCTTT
AGTCGCGTGGGGGCTTATGAAGGGGAGCGAGCCATCGCCCAAGCCATTATATATCTTTCGGTAGCACCAAAAAGTAATGC
CGTTTATACGGCGTTTAACACAGCAAAACAGCAAGCGAAAGATTTACCTGATTACGATGTTCCACCACATTTACGCAATG
CGCCAACTAATTTAATGAAAGAGCTCGGCTATGGCACTGAATATCGTTATGCTCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGACACTCAATATTATTTTCCAACGAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGGTTACGTGAGCAAGATAAAAGTGCGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (188-266)

• MgsA AAA+ ATPase C terminal (MgsA_C) (267-433)

• ATPase family associated with various cellular activities (AAA) (AAA) (53-159)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.007	94.843	0.37