Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NYR91_RS08685 Genome accession   NZ_CP103784
Coordinates   1664196..1664975 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain RO-NN-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1659196..1669975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS08665 (NYR91_08665) trmFO 1659889..1661196 (+) 1308 WP_014476799.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYR91_RS08670 (NYR91_08670) xerC 1661264..1662178 (+) 915 WP_014476800.1 tyrosine recombinase XerC -
  NYR91_RS08675 (NYR91_08675) clpQ 1662191..1662736 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  NYR91_RS08680 (NYR91_08680) hslU 1662753..1664156 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  NYR91_RS08685 (NYR91_08685) codY 1664196..1664975 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NYR91_RS08690 (NYR91_08690) flgB 1665355..1665744 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  NYR91_RS08695 (NYR91_08695) flgC 1665744..1666196 (+) 453 WP_014476802.1 flagellar basal body rod protein FlgC -
  NYR91_RS08700 (NYR91_08700) fliE 1666207..1666527 (+) 321 WP_014476803.1 flagellar hook-basal body complex protein FliE -
  NYR91_RS08705 (NYR91_08705) fliF 1666573..1668183 (+) 1611 WP_041519292.1 flagellar basal-body MS-ring/collar protein FliF -
  NYR91_RS08710 (NYR91_08710) fliG 1668196..1669212 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NYR91_RS08715 (NYR91_08715) fliH 1669205..1669957 (+) 753 WP_014476805.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=725011 NYR91_RS08685 WP_003220850.1 1664196..1664975(+) (codY) [Bacillus subtilis strain RO-NN-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=725011 NYR91_RS08685 WP_003220850.1 1664196..1664975(+) (codY) [Bacillus subtilis strain RO-NN-1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
AGCCGGTTTAACAACAATTGTGCCGATCATCGGTGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAGATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATCACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467