Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NYR48_RS08590 Genome accession   NZ_CP103782
Coordinates   1685872..1686651 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain DA4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1680872..1691651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS08570 trmFO 1681559..1682866 (+) 1308 WP_032871468.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYR48_RS08575 xerC 1682936..1683853 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  NYR48_RS08580 hslV 1683869..1684414 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  NYR48_RS08585 hslU 1684431..1685834 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  NYR48_RS08590 codY 1685872..1686651 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NYR48_RS08595 flgB 1687005..1687394 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  NYR48_RS08600 flgC 1687394..1687846 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  NYR48_RS08605 fliE 1687857..1688177 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  NYR48_RS08610 fliF 1688220..1689830 (+) 1611 WP_042635191.1 flagellar basal-body MS-ring/collar protein FliF -
  NYR48_RS08615 fliG 1689843..1690859 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NYR48_RS08620 fliH 1690852..1691607 (+) 756 WP_259425502.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=724848 NYR48_RS08590 WP_003154263.1 1685872..1686651(+) (codY) [Bacillus velezensis strain DA4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=724848 NYR48_RS08590 WP_003154263.1 1685872..1686651(+) (codY) [Bacillus velezensis strain DA4]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGAGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471