Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NYR47_RS22350 Genome accession   NZ_CP103777
Coordinates   4342403..4344739 (-) Length   778 a.a.
NCBI ID   WP_000528059.1    Uniprot ID   A0A2B5ZSB0
Organism   Bacillus toyonensis strain DC11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4337403..4349739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR47_RS22325 - 4340055..4340400 (+) 346 Protein_4358 PH domain-containing protein -
  NYR47_RS22330 - 4340443..4341510 (-) 1068 WP_000793112.1 AI-2E family transporter -
  NYR47_RS22335 - 4341692..4341904 (+) 213 WP_000242555.1 hypothetical protein -
  NYR47_RS22340 - 4341940..4342068 (-) 129 WP_001053553.1 YrzQ family protein -
  NYR47_RS22345 - 4342087..4342275 (-) 189 WP_000469281.1 hypothetical protein -
  NYR47_RS22350 recD2 4342403..4344739 (-) 2337 WP_000528059.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NYR47_RS22355 - 4344847..4345506 (-) 660 WP_000066402.1 tetratricopeptide repeat protein -
  NYR47_RS22360 mnmA 4345617..4346732 (-) 1116 WP_259417793.1 tRNA 2-thiouridine(34) synthase MnmA -
  NYR47_RS22365 - 4346749..4347894 (-) 1146 WP_259416242.1 cysteine desulfurase family protein -
  NYR47_RS22370 cymR 4347930..4348346 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87388.97 Da        Isoelectric Point: 5.2027

>NTDB_id=724801 NYR47_RS22350 WP_000528059.1 4342403..4344739(-) (recD2) [Bacillus toyonensis strain DC11]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKIIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKDQLVRETMSLLNNQEGRVTEEDIIGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEMLKTLGEIEEQLKVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGVSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAIPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCAGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=724801 NYR47_RS22350 WP_000528059.1 4342403..4344739(-) (recD2) [Bacillus toyonensis strain DC11]
ATGGGAAATCAACATGCCATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAATCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGACCACCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACGGCTGAAAAAATCGTAGATCACCTTGGTGAGCATGCCATTTCTAAAATTATGGATG
ATCCTGATGCGTTAAATGGTGTTGTTAACAAACAAAAAGCACAGGAAATATATGAGACAATTGTGGAGCATCAAGGGTTA
GAGAAAGTAATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAAATTTATCAGCAATATAAAGAAAT
GACATTAGAAGTGATTCGTAATAATCCATATCAACTTATTGAAGAAGTGGACGGGATTGGTTTTGGACGAGCAGATGATA
TAGGACGTGCGTTAGGTATATCGGGTAATCATGATGACCGTGTACGTGCGGGATGTTTTTATACGTTAGAGAATGTTTCA
CTGCAGCTCGGCCACGTTTATATGGGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGTAG
AGTGACTGAGGAAGACATTATAGGCTGTGTTGAAATGATGCAAAGTGAAGGGAAAGTCATCATTGAAGAAGAACGAGTGT
ACTTAGCATCGTTATTTTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGTAGGCTTATGAATCAAGAGGAAACCCCTTCA
TTTCCTGAAGCAGAAATGTTAAAAACATTAGGTGAAATTGAAGAACAGCTGAAGGTGCAGTATGCACCGTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAGCCGATGATGTTATTGACAGGTGGACCAGGAACGGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTACGCGTCCTTGCATGGGGTATCATTAAATCCGAATGAATACAGTGATGATAATCCATTTCCAATA
TTATTAACGGCTCCAACAGGAAGAGCAGCAAAGCGAATGAGTGAATCTACTGGGCTCCCTGCTTGTACAATTCATCGTCT
GCTTGGTTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACCGATCCAGTTCAAGGGAAGTTACTCATTATTGATGAGT
TTTCGATGGTAGATATTTGGCTTGCAAATCAGCTATTCAAGTCACTTCCGACAAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTGTTAAAAGATTTATTAAATGCAGGAGCCATTCCAACGGTAAAACT
TACAGAAATTTATCGTCAGGCGGAAGGTTCGTCTGTTATTCAGCTTGCCCATGCGATAAAAGACGGAACACTTCCACCGG
ATTTAGCGCAAAATAAAAAAGATCGTTCATTTATCAGCTGTGCAGGGGCTCAAATTGTTGAAGTTGTAAAAAAAGTATGT
GAAAACGCGAAGACGAAAGGGTTTAGCGCAAGAGATGTCCAAGTGTTGGCACCTATGTACCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTTCAAGAAGTGTTTAATCCGAAAAAAGAAAAAAGTAAAGAAATTGCCTACGGTGACGTTGTGT
ATCGAAGAGGTGATAAAGTACTTCAATTAGTCAATCAGCCGGAAAGCCAAGTATTTAATGGTGATATTGGAGAAATTGTT
TCGGTGTTTTATGCAAAAGAAAATGTTGAGCAACAGGACATGATTATCGTTTCATTTGATGGAATCGAAGTAACGTATAC
AAAGCCGGATTTAAATCAAATTACCCATGCATATTGCTGCTCGATTCATAAATCACAAGGTAGTGAATTTCCAATAGTTA
TTATGCCGATTGTAAAGAGCTACTACCGTATGTTACGTCGTAATTTAATTTACACGGGCATTACAAGAAGTAAGAAATTC
CTTATTATTTGTGGGGAGGAAGCGGCTTTTCAATCCGGTGTAAATCGCCTTGACGATGCAATGCGTCAAACGACTTTAGC
TAGTCGTTTGCAAGAATCACAAGGAGAGGTGCAGATGGTAACGGTTAATGGCGAGGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B5ZSB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.269

100

0.582