Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NYR93_RS06985 Genome accession   NZ_CP103769
Coordinates   1471076..1471855 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain ML61     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1466076..1476855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR93_RS06955 (NYR93_06955) fliH 1466120..1466875 (-) 756 WP_015388237.1 flagellar assembly protein FliH -
  NYR93_RS06960 (NYR93_06960) fliG 1466868..1467884 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NYR93_RS06965 (NYR93_06965) fliF 1467897..1469507 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  NYR93_RS06970 (NYR93_06970) fliE 1469550..1469870 (-) 321 WP_003154258.1 flagellar hook-basal body complex protein FliE -
  NYR93_RS06975 (NYR93_06975) flgC 1469881..1470333 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  NYR93_RS06980 (NYR93_06980) flgB 1470333..1470722 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  NYR93_RS06985 (NYR93_06985) codY 1471076..1471855 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NYR93_RS06990 (NYR93_06990) hslU 1471893..1473296 (-) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  NYR93_RS06995 (NYR93_06995) hslV 1473313..1473858 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  NYR93_RS07000 (NYR93_07000) xerC 1473874..1474791 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  NYR93_RS07005 (NYR93_07005) trmFO 1474861..1476168 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=724622 NYR93_RS06985 WP_003154263.1 1471076..1471855(-) (codY) [Bacillus velezensis strain ML61]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=724622 NYR93_RS06985 WP_003154263.1 1471076..1471855(-) (codY) [Bacillus velezensis strain ML61]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAAATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471