Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PYH54_RS05820 Genome accession   NZ_CP118830
Coordinates   1212474..1213247 (+) Length   257 a.a.
NCBI ID   WP_282873169.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 7054     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207474..1218247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH54_RS05800 (PYH54_05800) trmFO 1207818..1209125 (+) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  PYH54_RS05805 (PYH54_05805) xerC 1209542..1210438 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  PYH54_RS05810 (PYH54_05810) hslV 1210435..1210980 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  PYH54_RS05815 (PYH54_05815) hslU 1211046..1212449 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  PYH54_RS05820 (PYH54_05820) codY 1212474..1213247 (+) 774 WP_282873169.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PYH54_RS05825 (PYH54_05825) - 1213298..1213390 (+) 93 WP_031788481.1 hypothetical protein -
  PYH54_RS05830 (PYH54_05830) rpsB 1213589..1214356 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  PYH54_RS05835 (PYH54_05835) - 1214390..1214503 (+) 114 WP_001789890.1 hypothetical protein -
  PYH54_RS05840 (PYH54_05840) tsf 1214538..1215419 (+) 882 WP_000201387.1 translation elongation factor Ts -
  PYH54_RS05845 (PYH54_05845) pyrH 1215556..1216278 (+) 723 WP_000057330.1 UMP kinase -
  PYH54_RS05850 (PYH54_05850) frr 1216297..1216851 (+) 555 WP_001280006.1 ribosome recycling factor -
  PYH54_RS05855 (PYH54_05855) - 1217224..1217994 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28739.13 Da        Isoelectric Point: 6.0680

>NTDB_id=723812 PYH54_RS05820 WP_282873169.1 1212474..1213247(+) (codY) [Staphylococcus aureus strain 7054]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEFTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=723812 PYH54_RS05820 WP_282873169.1 1212474..1213247(+) (codY) [Staphylococcus aureus strain 7054]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATCCCAAGTGAATTTACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424