Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M5T00_RS15925 Genome accession   NZ_CP103589
Coordinates   3247297..3247926 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain 4750     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3242297..3252926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5T00_RS15910 (M5T00_15910) helD 3242539..3244593 (-) 2055 WP_001538528.1 DNA helicase IV -
  M5T00_RS15915 (M5T00_15915) yccF 3244716..3245162 (+) 447 WP_001261236.1 YccF domain-containing protein -
  M5T00_RS15920 (M5T00_15920) yccS 3245172..3247334 (+) 2163 WP_000875041.1 YccS family putative transporter -
  M5T00_RS15925 (M5T00_15925) sxy/tfoX 3247297..3247926 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  M5T00_RS15930 (M5T00_15930) sulA 3248145..3248654 (+) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  M5T00_RS15935 (M5T00_15935) ompA 3249010..3250050 (+) 1041 WP_001313715.1 porin OmpA -
  M5T00_RS15940 (M5T00_15940) matP 3250128..3250580 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  M5T00_RS15945 (M5T00_15945) ycbZ 3250766..3252526 (+) 1761 WP_000156498.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=723568 M5T00_RS15925 WP_000839136.1 3247297..3247926(-) (sxy/tfoX) [Escherichia coli strain 4750]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=723568 M5T00_RS15925 WP_000839136.1 3247297..3247926(-) (sxy/tfoX) [Escherichia coli strain 4750]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99