Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PUN20_RS27390 Genome accession   NZ_CP118638
Coordinates   5887225..5887821 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain P9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5882225..5892821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN20_RS27370 (PUN20_27360) aroK 5883356..5883874 (-) 519 WP_088412854.1 shikimate kinase AroK -
  PUN20_RS27375 (PUN20_27365) pilQ 5883886..5886030 (-) 2145 WP_088412855.1 type 4a pilus secretin PilQ Machinery gene
  PUN20_RS27380 (PUN20_27370) comL/pilP 5886084..5886608 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PUN20_RS27385 (PUN20_27375) pilO 5886605..5887228 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PUN20_RS27390 (PUN20_27380) pilN 5887225..5887821 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PUN20_RS27395 (PUN20_27385) pilM 5887821..5888885 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PUN20_RS27400 (PUN20_27390) - 5889070..5891541 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=723231 PUN20_RS27390 WP_003095839.1 5887225..5887821(-) (pilN) [Pseudomonas aeruginosa strain P9]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=723231 PUN20_RS27390 WP_003095839.1 5887225..5887821(-) (pilN) [Pseudomonas aeruginosa strain P9]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369