Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OP485_RS28850 Genome accession   NZ_CP118566
Coordinates   6199163..6199759 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain PA_HN005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6194163..6204759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OP485_RS28830 (OP485_28820) aroK 6195290..6195808 (-) 519 WP_003095833.1 shikimate kinase AroK -
  OP485_RS28835 (OP485_28825) pilQ 6195820..6197964 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  OP485_RS28840 (OP485_28830) pilP 6198018..6198546 (-) 529 Protein_5696 type 4a pilus biogenesis lipoprotein PilP -
  OP485_RS28845 (OP485_28835) pilO 6198543..6199166 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  OP485_RS28850 (OP485_28840) pilN 6199163..6199759 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  OP485_RS28855 (OP485_28845) pilM 6199759..6200823 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  OP485_RS28860 (OP485_28850) - 6201008..6203479 (+) 2472 WP_023518163.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=722969 OP485_RS28850 WP_003095839.1 6199163..6199759(-) (pilN) [Pseudomonas aeruginosa strain PA_HN005]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=722969 OP485_RS28850 WP_003095839.1 6199163..6199759(-) (pilN) [Pseudomonas aeruginosa strain PA_HN005]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ATAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369