Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NX856_RS08625 Genome accession   NZ_CP103412
Coordinates   1672476..1673255 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain HF-14109     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667476..1678255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX856_RS08605 (NX856_08605) trmFO 1668163..1669470 (+) 1308 WP_218791630.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NX856_RS08610 (NX856_08610) xerC 1669540..1670457 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  NX856_RS08615 (NX856_08615) hslV 1670473..1671018 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  NX856_RS08620 (NX856_08620) hslU 1671035..1672438 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  NX856_RS08625 (NX856_08625) codY 1672476..1673255 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NX856_RS08630 (NX856_08630) flgB 1673609..1673998 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  NX856_RS08635 (NX856_08635) flgC 1673998..1674450 (+) 453 WP_218791631.1 flagellar basal body rod protein FlgC -
  NX856_RS08640 (NX856_08640) fliE 1674461..1674781 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  NX856_RS08645 (NX856_08645) fliF 1674824..1676434 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  NX856_RS08650 (NX856_08650) fliG 1676447..1677463 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NX856_RS08655 (NX856_08655) fliH 1677456..1678211 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=722655 NX856_RS08625 WP_003154263.1 1672476..1673255(+) (codY) [Bacillus velezensis strain HF-14109]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=722655 NX856_RS08625 WP_003154263.1 1672476..1673255(+) (codY) [Bacillus velezensis strain HF-14109]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471