Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NVV71_RS08495 Genome accession   NZ_CP103399
Coordinates   1615704..1618100 (+) Length   798 a.a.
NCBI ID   WP_070753046.1    Uniprot ID   -
Organism   Listeria innocua strain F6215     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1610704..1623100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV71_RS08475 (NVV71_08475) - 1611856..1613004 (+) 1149 WP_003762369.1 cysteine desulfurase family protein -
  NVV71_RS08480 (NVV71_08480) mnmA 1613023..1614138 (+) 1116 WP_033533008.1 tRNA 2-thiouridine(34) synthase MnmA -
  NVV71_RS08485 (NVV71_08485) - 1614256..1614996 (+) 741 WP_003766975.1 alpha/beta hydrolase -
  NVV71_RS08490 (NVV71_08490) - 1615040..1615678 (+) 639 WP_187989072.1 tetratricopeptide repeat protein -
  NVV71_RS08495 (NVV71_08495) recD2 1615704..1618100 (+) 2397 WP_070753046.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NVV71_RS08500 (NVV71_08500) pieS 1618130..1619569 (-) 1440 WP_003771912.1 two component system sensor histidine kinase PieS -
  NVV71_RS08505 (NVV71_08505) pieR 1619566..1620252 (-) 687 WP_070753048.1 two component system response regulator PieR -
  NVV71_RS08510 (NVV71_08510) - 1620420..1621922 (+) 1503 WP_070753050.1 ABC transporter permease -
  NVV71_RS08515 (NVV71_08515) - 1621931..1622626 (+) 696 WP_070753052.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90149.39 Da        Isoelectric Point: 4.8394

>NTDB_id=722491 NVV71_RS08495 WP_070753046.1 1615704..1618100(+) (recD2) [Listeria innocua strain F6215]
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNANWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVMAENIVDTIGDDAITKILSDPSLLNTVPKLPSGTAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQVYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQAILLQQIEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGESQRAALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFAKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLMSEDVMLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=722491 NVV71_RS08495 WP_070753046.1 1615704..1618100(+) (recD2) [Listeria innocua strain F6215]
ATGGCTGAACAAGAATCTCTCGCCTTATTTAATGATACCCCAGAAGAACTTTTCATGAAGGGGACGATGTTGTCTACCAT
TTTTTATAATGCCGAAAACCTCTTTTCTGTGGTAAGAATTCTAGTAAAAGAGACGAATGCGAATTGGGATGAAAAGGATA
TTATTGTAACTGGTTTTTTCCCAGCGCTTCATGAACAAGAAGTGTATACTTTTTACGGAAAAATGCAGGAACATGCTAAA
TTTGGTCAGCAATTTAAAGCGGACCGGTTTCGAAAAGAAATGCCTCAATCTCGCGCTGGCTTGATTAACTATCTTTCAGG
GGAACTTTTCAAAGGGATTGGTAAAGTAATGGCGGAAAACATTGTCGATACAATTGGTGATGACGCGATTACGAAAATAC
TATCTGACCCAAGTTTACTAAATACTGTTCCTAAACTGCCTTCTGGAACAGCGGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGTTTAGAGCATGTGATGGTTGGTTTAAATGAATATGGCTTTGGCCCGCAATTATCCATGAAAATTTTTCAGGT
ATATAAACAAAATGCGATCGAAGTGCTAGAAAATAATCCTTATAAATTAATTGAAGATGTTAAAGGAATTGGTTTCCAGC
GTGCCGATGAGCTTGGTCGTAAGCTTGGACTTGGTGGAAACCATCCAGAACGACTTAGAGCAGGGATTTTATTTATGCTA
GATTCCGTTTGTATGCAGCAAGGGCATGTCTATATGGAACAAGAGGTTTTGCTCGGGGAAGTAACTTATCTGCTAGAAGA
AAGTGAAGGCATTAGGATTGATCAGGCAATTTTACTGCAACAAATAGAAAAACTTGCAGAAGAACAAAAAATAATTACCG
AAAACACGCGCGTCTATATGCCGTCACTTTATTATTCAGAAAGCGGTTTTGCTTACCATGTAAAACGGATGTTAAAGCAA
ACAGAGTATCAAGAACAATTTCCGCAATCGGAGTTTTTATTAGCGCTTGGGGAACTTGAAGAGCGCATTGGCGTGCATTA
CGGGGAATCTCAACGTGCGGCATTAGAACAAGCTTTAATGTCACCGATGCTCGTTCTTACTGGAGGACCAGGAACAGGGA
AAACGACTGTTATTAAAGGAATTGTAGAATTATATGCCGAGTTAAATGGTGTTAGTCTTGATCCACATGCCTATAAAGAT
GGTGCGACTTTTCCAGTGTTACTCGCAGCTCCAACAGGTCGTGCGGCTAAACGAATGTCTGAATCCACTGGCCTTCCTGC
AATGACGATTCACCGGTTACTTGGAATGAATGGTCAAGAACAGATGGATGACGATGCAGAACGATTAATTGATGGACGTT
TGTTAATTGTGGATGAAATGTCAATGGTGGATATTTGGCTTGCGAATCAATTATTCCGCGCTTTACCTGCTCATATGCAA
GTAGTGCTCGTTGGCGACCAAGACCAGCTTCCTTCTGTTGGACCAGGTCAAGTTTTAAAAGATATTCTACAATCAGAACA
AATTCCGACGGTTGCACTTTCAGATATTTATCGGCAAAAAGATGGTTCTTCAATCATTGAAATGGCTCATTATATCAAAG
AAGGAATGCTACCAGCTGATTTTGCGAAAAATAGTGCCGATCGGTCATTTTTCCACTGTACTGTAAATCAAATTGGTGAC
GTTGTGGAACAAGTCGTGAAAAATGCTAAAAATAAAGGTTTTCGTGCAAAAGATATTCAAGTGTTGGCTCCAATGTATCG
CGGTCCAGCTGGAATTGATATATTAAATAAAAAACTACAAGAAATCTTTAATCCAAACGACACTGGTCGCCGAAAAGAAG
TACAATTTGGCGAAATCAAATACCGGGTTCACGACAAAGTGTTGCAACTAATCAACCAACCGGAGAAAAATGTCTTTAAC
GGAGATATTGGTGAAATCGTATCCATTATTTATGCCAAAGAAAATACCGAGAAACAAGATTTAATTGTCGTTCAATTTGA
CCAAACAGAGGTTTCTTATTACAGGCAAGAGTTTAATCAATTAACCCATGCTTATTGTTGTTCGATTCATAAAGCGCAGG
GTAGTGAGTTTCCGATTGTTATTATGCCAATTGTGCGTAGTTATTACCGGATGTTACGTAGAGATTTGTTATATACTGGC
GTTACAAGAAGTAAACAATTCCTAATTCTTTGCGGAGAAGAAGAAGCTTTCCGAATGGGTGTAGAACGTGTAGATGAAAA
TAAGCGAAATACCACTCTATCGGAACGTTTAATGAGTGAAGATGTGATGCTCGAACAAATGACAAATAAACGAATATTAA
CTGCCGAAAACATTACGGAGATTGATCCAATGATTGGGATGGAAGGAATTACTCCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

AAA domain (AAA_30)

(347-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.107

98.747

0.564