Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PVE41_RS09735 Genome accession   NZ_CP118438
Coordinates   2012996..2013706 (-) Length   236 a.a.
NCBI ID   WP_043920923.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 1908-10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2007996..2018706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS09705 (PVE41_09705) gspL 2008180..2009379 (+) 1200 WP_043920924.1 type II secretion system protein GspL -
  PVE41_RS09710 (PVE41_09710) - 2009387..2009878 (+) 492 WP_011078935.1 type II secretion system protein M -
  PVE41_RS09715 (PVE41_09715) - 2009880..2010641 (+) 762 WP_011078934.1 type II secretion system protein N -
  PVE41_RS09720 (PVE41_09720) cysQ 2010769..2011596 (-) 828 WP_011078933.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PVE41_RS09725 (PVE41_09725) nudE 2011611..2012165 (-) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  PVE41_RS09730 (PVE41_09730) nfuA 2012281..2012865 (-) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  PVE41_RS09735 (PVE41_09735) comF 2012996..2013706 (-) 711 WP_043920923.1 amidophosphoribosyltransferase Machinery gene
  PVE41_RS09740 (PVE41_09740) bioH 2013795..2014562 (+) 768 WP_011078929.1 pimeloyl-ACP methyl ester esterase BioH -
  PVE41_RS09745 (PVE41_09745) - 2014700..2015170 (+) 471 WP_011078928.1 hypothetical protein -
  PVE41_RS09750 (PVE41_09750) - 2015386..2017710 (-) 2325 WP_011078927.1 Tex family protein -
  PVE41_RS09755 (PVE41_09755) greB 2017946..2018428 (+) 483 WP_011078926.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27280.02 Da        Isoelectric Point: 9.8519

>NTDB_id=722400 PVE41_RS09735 WP_043920923.1 2012996..2013706(-) (comF) [Vibrio vulnificus strain 1908-10]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCQHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPTSHYVNQIKHQRKFWYCASLAPLLIQRIDRPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=722400 PVE41_RS09735 WP_043920923.1 2012996..2013706(-) (comF) [Vibrio vulnificus strain 1908-10]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTTTGGTGCCAGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTTTACTGCCTCACGCCGTAT
CGCTTTCCAACCTCACACTACGTCAATCAAATCAAACATCAGCGCAAGTTCTGGTACTGTGCCAGCTTGGCACCTTTGCT
CATCCAACGCATTGACCGCCCCGCGCCACTGCTGCTCTCTGTGCCAATGCATTGGCGTCGGCAATGGCTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTATTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAACTTAGCGGGTGCCTTTCGCCTCAATCGCTCGGC
TCTGCCCCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.667

100

0.475