Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NX823_RS08835 Genome accession   NZ_CP103352
Coordinates   1714076..1714855 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM117508     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1709076..1719855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX823_RS08815 (NX823_08815) trmFO 1709769..1711076 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NX823_RS08820 (NX823_08820) xerC 1711144..1712058 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  NX823_RS08825 (NX823_08825) clpQ 1712071..1712616 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  NX823_RS08830 (NX823_08830) hslU 1712633..1714036 (+) 1404 WP_121548844.1 HslU--HslV peptidase ATPase subunit -
  NX823_RS08835 (NX823_08835) codY 1714076..1714855 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NX823_RS08840 (NX823_08840) flgB 1715235..1715624 (+) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  NX823_RS08845 (NX823_08845) flgC 1715624..1716076 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  NX823_RS08850 (NX823_08850) fliE 1716087..1716407 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  NX823_RS08855 (NX823_08855) fliF 1716453..1718063 (+) 1611 WP_046160402.1 flagellar basal-body MS-ring/collar protein FliF -
  NX823_RS08860 (NX823_08860) fliG 1718076..1719092 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NX823_RS08865 (NX823_08865) fliH 1719085..1719837 (+) 753 WP_014479782.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=722291 NX823_RS08835 WP_003220850.1 1714076..1714855(+) (codY) [Bacillus subtilis strain SRCM117508]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=722291 NX823_RS08835 WP_003220850.1 1714076..1714855(+) (codY) [Bacillus subtilis strain SRCM117508]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467