Detailed information    

insolico Bioinformatically predicted

Overview


Name   codY   Type   Regulator
Locus tag   NX819_RS09040 Genome accession   NZ_CP103351
Coordinates   1714947..1715726 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM115947     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context


Location: 1709947..1720726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX819_RS09020 (NX819_09020) trmFO 1710640..1711947 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NX819_RS09025 (NX819_09025) xerC 1712015..1712929 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  NX819_RS09030 (NX819_09030) clpQ 1712942..1713487 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  NX819_RS09035 (NX819_09035) hslU 1713504..1714907 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  NX819_RS09040 (NX819_09040) codY 1714947..1715726 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NX819_RS09045 (NX819_09045) flgB 1716106..1716495 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  NX819_RS09050 (NX819_09050) flgC 1716495..1716947 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  NX819_RS09055 (NX819_09055) fliE 1716958..1717278 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  NX819_RS09060 (NX819_09060) fliF 1717324..1718934 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  NX819_RS09065 (NX819_09065) fliG 1718947..1719963 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NX819_RS09070 (NX819_09070) fliH 1719956..1720708 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence


Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=722212 NX819_RS09040 WP_003220850.1 1714947..1715726(+) (codY) [Bacillus subtilis strain SRCM115947]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=722212 NX819_RS09040 WP_003220850.1 1714947..1715726(+) (codY) [Bacillus subtilis strain SRCM115947]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1

  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467