Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NW902_RS09440 Genome accession   NZ_CP103292
Coordinates   2169289..2171157 (-) Length   622 a.a.
NCBI ID   WP_413311081.1    Uniprot ID   -
Organism   Bifidobacterium breve strain JKL2022     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2164289..2176157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW902_RS09425 (NW902_09425) - 2164855..2166273 (-) 1419 WP_413311079.1 MFS transporter -
  NW902_RS09430 (NW902_09430) - 2166378..2167319 (+) 942 WP_106630693.1 FAD:protein FMN transferase -
  NW902_RS09435 (NW902_09435) rcrQ 2167328..2169157 (-) 1830 WP_106630694.1 ABC transporter ATP-binding protein Regulator
  NW902_RS09440 (NW902_09440) rcrP 2169289..2171157 (-) 1869 WP_413311081.1 ABC transporter ATP-binding protein Regulator
  NW902_RS09445 (NW902_09445) - 2171341..2171862 (-) 522 WP_413311082.1 MarR family winged helix-turn-helix transcriptional regulator -
  NW902_RS09450 (NW902_09450) - 2172468..2173052 (-) 585 WP_021650037.1 LPXTG-motif protein cell wall anchor domain protein -
  NW902_RS09455 (NW902_09455) - 2173093..2173530 (-) 438 WP_021650038.1 hypothetical protein -
  NW902_RS09460 (NW902_09460) - 2173520..2174080 (+) 561 WP_021650039.1 transposase family protein -
  NW902_RS09465 (NW902_09465) - 2174227..2174775 (+) 549 Protein_1834 ISL3 family transposase -
  NW902_RS09470 (NW902_09470) - 2175063..2175629 (-) 567 WP_015439314.1 sugar O-acetyltransferase -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68157.75 Da        Isoelectric Point: 5.1129

>NTDB_id=721767 NW902_RS09440 WP_413311081.1 2169289..2171157(-) (rcrP) [Bifidobacterium breve strain JKL2022]
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVACAIITGYIAA
RVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVA
TAIAVVILLVAVVILMAMVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAI
MMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTE
PIVKNGTKRAADIAKTGQTGTVEFRNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQV
LVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDTVELADTSTPAGRKREALQLAADAANDGKLTDE
QMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDAFAE
EAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHKELLENCEVYRQIAESQLSESELTA

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=721767 NW902_RS09440 WP_413311081.1 2169289..2171157(-) (rcrP) [Bifidobacterium breve strain JKL2022]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTTATCGCCTTAGTGTCCATCGTCGGGCAAAT
CTGGTTCGACCTCGAACTGCCCGATTATATGTCAGACATCACCACCCTGGTCGAGACGCCGGGCAGCGCAATGGCGGACA
TCTGGGTCGCCGGCGGCAAGATGCTGCTGGTCTCGCTCGGCTCGGTCGCCTGCGCGATCATCACCGGTTACATCGCGGCA
CGCGTGGCCTCCAGCTTCGGCCAGCGCCTGCGCTCGCTCGAATTCCGTAAGGTCGAATCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAAATCCAGATGTTCATCACCATGGGTCTGC
AGCTCATTGTCAAGTCGCCGATCATGGCCGTGTGGGCTGTCTGCAAGATTGCCGGCGAGGGCTTCGAATGGACGGTGGCC
ACGGCCATCGCGGTCGTGATCCTGCTGGTCGCTGTCGTAATCCTCATGGCGATGGTCATGCCGAAGTTCAAGGCCATGCA
GAGGCTCACCGATAACATCAACCTCGTGGCCCGCGAGAATCTCACTGGTCTGCGGGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGTCCAAATTCACCAAGGCGAACAAGGATCTGACCGATACGCAGCTGTTCACCAACCGCACCATGGCCATC
ATGATGCCGCTGATGAACACGGTGATGAACGGCCTTATGCTCGCCGTCTACTGGATTGGCGCCTACCTGATCGAGGCCGC
CGAGCTTACCGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCGTGCAGGTGATTATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTTTGGCCTCGTGCCGACGTGTCCGCGCAGCGTGTGATGGAAGTGCTCAACACCGAG
CCGATTGTGAAAAACGGCACCAAGCGCGCGGCCGACATCGCCAAGACCGGTCAGACCGGCACCGTGGAATTCAGGAACGT
GAGCTTTACCTACCCGGATTCGCGTGAGGCCATGCTGCAGGATATCAACTTCAAAGCCGAGAAGGGCCAGACCGTGGCGT
TCATCGGTTCTACCGGCTCGGGCAAGTCGTCGCTGATTAATCTTGTGCCGCGCTTCTACGACGTATCCGCCGGGCAAGTG
CTCGTCGACGGTGTGGACGTGCGCGACTATGACATGGTCGCCCTGCGAGACAAAATCGGCTACGTGCCGCAGCGTTCCGT
ATTGTTCAAGGGCACCGTGGCCGGCAATATCAGCTACGGCGACAAGCCCGGAGAGAACGACACGGTCGAACTGGCGGATA
CCTCCACTCCCGCCGGCCGTAAGCGTGAGGCGCTTCAGCTGGCCGCCGATGCCGCCAACGACGGCAAGTTGACAGACGAG
CAGATGAGCCGTGTCAAGGCCGCTGCCGACGTGGCCCAGGCCAGCGAATTCGTCAACCGCATGGACGGCGGATTCGATTC
GCCGATCGCACAAGGCGGCTCGAACGTGTCCGGTGGCCAGAAGCAGCGTCTGTCCATCGCCCGCGCCGTCTACCGTCATC
CGGAAATCCTGATTTTCGATGACTCGTTCTCTGCGCTCGACTTCAAAACCGACCGTGCGGTGCGAGACGCGTTCGCTGAG
GAAGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGTACGATCATGAACGCCGATCGCATCGTGGTGCTTGA
CGAGGGCAAGGTTGTGGGACAAGGCACACACAAGGAGTTGCTCGAGAACTGCGAAGTGTACCGACAGATTGCCGAATCCC
AGCTGAGTGAATCGGAACTGACTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-542)

ABC transporter transmembrane region (ABC_membrane)

(53-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.418

100

0.492