Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   PVK48_RS08550 Genome accession   NZ_CP118307
Coordinates   1677797..1678276 (-) Length   159 a.a.
NCBI ID   WP_229021993.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20200554     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1672797..1683276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK48_RS08530 (PVK48_08480) - 1672966..1673571 (-) 606 WP_002982799.1 response regulator transcription factor -
  PVK48_RS08535 (PVK48_08485) - 1673552..1675114 (-) 1563 WP_002988111.1 ATP-binding protein -
  PVK48_RS08540 (PVK48_08490) - 1675154..1677061 (-) 1908 WP_002988108.1 FtsX-like permease family protein -
  PVK48_RS08545 (PVK48_08495) - 1677063..1677800 (-) 738 WP_002988104.1 ABC transporter ATP-binding protein -
  PVK48_RS08550 (PVK48_08500) comA/nlmT 1677797..1678276 (-) 480 WP_229021993.1 ATP-binding cassette domain-containing protein Regulator
  PVK48_RS08555 (PVK48_08505) - 1678332..1679957 (-) 1626 WP_002988097.1 DUF4135 domain-containing protein -
  PVK48_RS08560 (PVK48_08510) - 1680039..1680194 (-) 156 WP_002982773.1 type A2 lanthipeptide -
  PVK48_RS08565 (PVK48_08515) lacG 1680697..1682103 (-) 1407 WP_397610634.1 6-phospho-beta-galactosidase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18505.10 Da        Isoelectric Point: 6.3350

>NTDB_id=721767 PVK48_RS08550 WP_229021993.1 1677797..1678276(-) (comA/nlmT) [Streptococcus pyogenes strain 20200554]
MFDGDVMYNISLGRESVSGEQVIETCKRVSLYEDIRSMPMKFHTPLFRDNPSLSGGQKQRISLARELVTTPRILVLDEPT
SALDVKTERIIQKNVEALHCTRVLVTHRLNTVEKADKILIMDNGKIIDYGSHHCLYKNNEYYRDLYDSYMNNYQEEEIK

Nucleotide


Download         Length: 480 bp        

>NTDB_id=721767 PVK48_RS08550 WP_229021993.1 1677797..1678276(-) (comA/nlmT) [Streptococcus pyogenes strain 20200554]
ATATTTGATGGGGATGTGATGTATAACATTTCGCTAGGGAGAGAATCTGTTTCAGGAGAACAGGTTATTGAAACTTGTAA
AAGGGTATCACTATATGAGGATATCAGGAGTATGCCAATGAAGTTTCATACCCCACTTTTTCGAGACAATCCATCACTAT
CTGGGGGGCAAAAACAACGAATTTCTCTAGCAAGAGAGTTAGTAACTACCCCTAGAATCTTAGTTCTTGATGAACCTACA
TCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGGTTTTGGTTACCCA
TAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTAATAATGGATAATGGGAAAATTATTGACTATGGTAGTCATCATT
GTTTATATAAAAATAATGAGTACTATCGTGATTTATATGATTCGTACATGAACAACTATCAGGAGGAAGAGATAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(34-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

39.597

93.711

0.371
  rcrQ Streptococcus mutans UA159

39.333

94.34

0.371