Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NWE71_RS17830 Genome accession   NZ_CP103291
Coordinates   3678649..3681054 (-) Length   801 a.a.
NCBI ID   WP_258831539.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain NS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3673649..3686054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE71_RS17805 - 3675125..3676201 (-) 1077 WP_095389837.1 AI-2E family transporter -
  NWE71_RS17810 - 3676428..3676643 (-) 216 WP_034311361.1 hypothetical protein -
  NWE71_RS17815 - 3676633..3677091 (-) 459 WP_258831536.1 PRC-barrel domain-containing protein -
  NWE71_RS17820 - 3677230..3677997 (-) 768 WP_258831537.1 YgcG family protein -
  NWE71_RS17825 - 3677997..3678566 (-) 570 WP_374116790.1 LemA family protein -
  NWE71_RS17830 recD2 3678649..3681054 (-) 2406 WP_258831539.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NWE71_RS17835 - 3681091..3681756 (-) 666 WP_095389846.1 lipopolysaccharide assembly protein LapB -
  NWE71_RS17840 mnmA 3681878..3682993 (-) 1116 WP_034308651.1 tRNA 2-thiouridine(34) synthase MnmA -
  NWE71_RS17845 - 3683023..3684168 (-) 1146 WP_258831540.1 cysteine desulfurase family protein -
  NWE71_RS17850 cymR 3684229..3684648 (-) 420 WP_034308657.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90619.33 Da        Isoelectric Point: 4.7986

>NTDB_id=721733 NWE71_RS17830 WP_258831539.1 3678649..3681054(-) (recD2) [Peribacillus frigoritolerans strain NS1]
MSQQDSLDLFSEEKKFMKGSHLVTIFHNEENMYSVVRIRVHETNLDYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQFHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFFLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDITKQQEDRSFIRCQTNQIPQ
VIEKVVANARTKGFTSKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILYAKENTDSVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREILSEEEMPVEKGEVHQEASYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=721733 NWE71_RS17830 WP_258831539.1 3678649..3681054(-) (recD2) [Peribacillus frigoritolerans strain NS1]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAGGAGAAAAAGTTCATGAAAGGCAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTGTAAGAATTCGTGTGCATGAAACGAATCTGGATTACGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATTTATATTTTTTATGGGGCCATGAAGGAACATCCGCGTTTTGGC
CTTCAATTCCATGTAGAGCATTTTCGCAAGGATCTGCCTCAATCCAAGGAAGGCATCGTCAGTTATTTATCAGGTGACCT
TTTCAAGGGCATTGGGAAAAAAACAGCCGAAAGCATTGTTGAGACACTGGGTGAAAAGGCCATTTCAAAAATTCTGGCTC
AGCCTTCGCTGCTTGATGATATCCCGAAGCTATCAGGGGAAAAGGCAAAGGGCCTTTATGATACATTAGTCGAGCATCAA
GGTCTGGAGCAGGTGATGATCGCCCTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAAATTTATCAAATGTATAA
GCAGGATACGATCACGATGGTTCAGGGTAATCCGTATAAGCTCGTAGAGGATATTGAAGGGATTGGGTTTGGACGGGCGG
ATGAGCTTGGGCATCAGCTCGGCATTTCCGGCAGCCACCCTGACCGAATCAAGGCTGCGTGCTTGTATACGCTGGAATCC
CAATGCCTCCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTTTTGGAAGCGGTCAAACGGCTGCTGGAGGAAAATAA
ACGGGATCGCATTGAGTTCACCAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGGAAAATAGTTGTCGAGGATC
AACGAATTTATCCGCCTTCCCTATTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGCGGCTGCTTGCTCAAACCGAG
TATGAGGACCAGTTCCCCGAATCGGAATTCTTTCTGGCACTTGGGGAGCTGGAAGAGCGGCTGGATGTTTCCTATGCCCC
GGCTCAAAAGGAAGCGATCCAGACAGCCCTGCAATCACCCATGTTAATCTTGACGGGGGGACCGGGTACCGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAGCTATATGCAGAGCTGCATGGTGTATCCATGGACATAAACGATTATAAAAAAGAAGGA
AGCGATCCCTTTCCATTCGTACTTGCGGCTCCTACTGGCCGTGCAGCGAAACGCATGGCCGAGTCGACGGGGCTCCCCGC
AGTCACGATCCACCGTTTGCTGGGGTGGAACGGGAGTGAAGGCTTTTCTCATGATGAGGATAATCAGCTGGATGGCCGTA
TCGTGATCATCGATGAGGTTTCGATGGTGGATACGTGGCTGGCCCATCAATTGTTTAAAGCTCTGCCGGAAAATGTCCAA
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTTGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTCGAACATATATATCGTCAAGCTGATGGGTCATCGATCATTGAATTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATATCACGAAACAGCAGGAAGATCGATCGTTCATTCGCTGTCAAACCAATCAAATCCCCCAG
GTAATCGAGAAAGTGGTTGCCAATGCCAGGACGAAAGGCTTCACGTCCAAAGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCCGGGATTGATGCACTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAAAAGCGGCGGGAAA
TAAAATTCGGAGATGTGATATATAGAACCGGAGATAAGGTGCTTCAACTGGTGAACCAGCCAGAGGAAGGTGTCTTTAAT
GGCGATATGGGGGAAATCGTGTCCATATTGTACGCTAAAGAAAATACCGATTCTGTCGATAAAGTGATCATATCGTTCGA
AGGCATCGAAGTGACTTACACGAAGCAGGATTTGAACCAGATCACACATGCCTATTGCTGCTCCATCCATAAGTCGCAGG
GAAGCGAATTCCCCATCGTCATTTTACCTGTAGTGAAAAGTTATTACCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTATGTGGTGAAGAAGATGCATTCCGTTTAGGGATCGAGCGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCGGGAGATCTTGAGTGAAGAAGAAATGCCGGTTGAAAAGGGAGAGGTAC
ATCAAGAGGCAAGTTATCTTGATATTCTTATGCATGCTGACCCGATGATCGGGATGGAGAATGTCACGCCATATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

AAA domain (AAA_30)

(345-555)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.422

100

0.624