Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NXY85_RS03620 Genome accession   NZ_CP103290
Coordinates   684942..685721 (+) Length   259 a.a.
NCBI ID   WP_003328951.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 679942..690721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS03600 trmFO 680637..681944 (+) 1308 WP_258729206.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NXY85_RS03605 xerC 682011..682925 (+) 915 WP_258729207.1 tyrosine recombinase XerC -
  NXY85_RS03610 clpQ 682939..683484 (+) 546 WP_258729208.1 ATP-dependent protease subunit ClpQ -
  NXY85_RS03615 hslU 683501..684904 (+) 1404 WP_010788603.1 HslU--HslV peptidase ATPase subunit -
  NXY85_RS03620 codY 684942..685721 (+) 780 WP_003328951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NXY85_RS03625 flgB 686142..686531 (+) 390 WP_258729209.1 flagellar basal body rod protein FlgB -
  NXY85_RS03630 flgC 686531..686980 (+) 450 WP_061670771.1 flagellar basal body rod protein FlgC -
  NXY85_RS03635 fliE 686991..687311 (+) 321 WP_010788606.1 flagellar hook-basal body complex protein FliE -
  NXY85_RS03640 fliF 687355..688962 (+) 1608 WP_258729210.1 flagellar basal-body MS-ring/collar protein FliF -
  NXY85_RS03645 fliG 688975..689991 (+) 1017 WP_003328945.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29042.26 Da        Isoelectric Point: 4.6017

>NTDB_id=721648 NXY85_RS03620 WP_003328951.1 684942..685721(+) (codY) [Bacillus atrophaeus strain NS2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=721648 NXY85_RS03620 WP_003328951.1 684942..685721(+) (codY) [Bacillus atrophaeus strain NS2]
ATGGCTTTATTACAAAAAACAAGAATTATTAATTCCATGCTTCAAGCTGCGGCAGGGAAACCGGTAAACTTTAAAGAAAT
GGCGGAAACACTTCGGGATGTTATTGATTCAAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTGTTAGGCTATTCTATTA
ATCAGCAAATCGAGAACGACCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAATACACAAAAAACCTATTT
AATATTCCGGAGACTTCTTCTAATCTGGATATTAACAGTGAGTACACAGCGTTTCCGGTCGAAAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTACCTATTATCGGAGGCGGAGAAAGACTTGGAACGCTTATTCTTTCACGCTTGCAGGATC
AATTTGAGGACGATGATCTAATTCTTGCTGAATACGGGGCGACCGTTGTAGGAATGGAAATCCTCAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGCAGCAAAGCTGTAGTTCAAATGGCGATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGACGGAAACGAAGGCCTGCTTGTGGCGAGTAAAATTGCAGACCGCGTCGGCATTACCC
GTTCCGTGATTGTCAATGCACTCAGAAAGCTTGAAAGTGCCGGTGTCATCGAATCGAGATCACTCGGAATGAAGGGCACT
TATATTAAAGTCCTTAATAACAAGTTCTTGATCGAATTAGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471