Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NXY85_RS03590 Genome accession   NZ_CP103290
Coordinates   677398..678297 (+) Length   299 a.a.
NCBI ID   WP_258729204.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 672398..683297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS03570 - 673048..674796 (+) 1749 WP_258729203.1 hypothetical protein -
  NXY85_RS03575 - 674793..675074 (+) 282 WP_010788597.1 FlhB-like flagellar biosynthesis protein -
  NXY85_RS03580 sucC 675248..676405 (+) 1158 WP_010788598.1 ADP-forming succinate--CoA ligase subunit beta -
  NXY85_RS03585 sucD 676434..677336 (+) 903 WP_003328958.1 succinate--CoA ligase subunit alpha -
  NXY85_RS03590 dprA 677398..678297 (+) 900 WP_258729204.1 DNA-processing protein DprA Machinery gene
  NXY85_RS03595 topA 678486..680561 (+) 2076 WP_258729205.1 type I DNA topoisomerase -
  NXY85_RS03600 trmFO 680637..681944 (+) 1308 WP_258729206.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NXY85_RS03605 xerC 682011..682925 (+) 915 WP_258729207.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33231.28 Da        Isoelectric Point: 9.5696

>NTDB_id=721647 NXY85_RS03590 WP_258729204.1 677398..678297(+) (dprA) [Bacillus atrophaeus strain NS2]
MDQASACLLICSINRLLSPSLLLKWWKADPSLSFKTDPHPIHTITSGKIKAAALKTQIEKEYDKLQEQLSDYQRRGIKVI
PITSHQYPTWLKTIYDPPPVLFAKGNENLLIKGRKIGVVGTRNPTAYGKKAVFHLTKELAGNQWIIVSGLAAGIDGLSHR
ACIRARGYTIGVIAGGFHHIYPRENQQLAEYMAKYHLLLSEHPPETKPQKWHFPMRNRLISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFDPYSGGPIKLIQEGAKSVQSAEDIYSELSEGNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=721647 NXY85_RS03590 WP_258729204.1 677398..678297(+) (dprA) [Bacillus atrophaeus strain NS2]
TTGGATCAGGCGTCTGCCTGTTTACTCATTTGCAGCATTAACCGTTTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
GGCTGATCCGTCTCTTTCTTTTAAGACTGATCCGCACCCAATACACACCATCACTTCCGGTAAAATAAAAGCCGCCGCGC
TTAAAACTCAAATAGAGAAAGAATATGATAAGCTTCAAGAACAGCTGTCTGACTATCAACGGCGAGGTATCAAAGTCATT
CCGATCACTTCACATCAATATCCGACATGGCTGAAAACGATCTATGATCCGCCTCCCGTTTTGTTTGCCAAAGGGAATGA
GAACCTGCTTATAAAAGGCCGGAAAATTGGAGTGGTAGGTACGCGAAATCCTACCGCATATGGCAAAAAAGCAGTTTTTC
ATCTAACAAAAGAGCTTGCAGGCAACCAGTGGATCATTGTCAGCGGACTCGCGGCCGGAATAGACGGTTTGTCCCATAGA
GCCTGCATCAGGGCAAGAGGGTATACAATCGGTGTCATAGCAGGCGGTTTTCATCATATATATCCCCGAGAAAATCAGCA
GTTAGCAGAATACATGGCGAAGTATCATCTGCTGCTGTCAGAACATCCACCGGAAACAAAACCCCAAAAATGGCATTTTC
CCATGAGAAACCGTTTAATAAGCGGGTTGTCCGAAGGCATAGTGGTAGTGCAAGGCAAAGAAAAAAGCGGTTCGTTAATC
ACTGCCTATCAAGCGCTTGACCAGGGCAGGGAGGTGTTTGCCGTGCCTGGTTCTATATTTGATCCATACTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCAAAATCTGTACAGTCCGCTGAGGATATTTACAGTGAGTTATCGGAGGGAAACGTTC
AATATACGGAACCCTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

73.913

100

0.739