Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EL334_RS09575 Genome accession   NZ_AP019192
Coordinates   1781533..1782459 (-) Length   308 a.a.
NCBI ID   WP_001291296.1    Uniprot ID   A0A0T8U5M2
Organism   Streptococcus pneumoniae strain ASP0581     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1776533..1787459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL334_RS09555 (ASP0581_18030) treP 1777115..1779082 (-) 1968 WP_033705146.1 PTS system trehalose-specific EIIBC component -
  EL334_RS09560 (ASP0581_18040) treR 1779267..1779977 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  EL334_RS09570 - 1780132..1781458 (+) 1327 Protein_1801 ISL3 family transposase -
  EL334_RS09575 (ASP0581_18080) amiF 1781533..1782459 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  EL334_RS09580 (ASP0581_18090) amiE 1782470..1783537 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  EL334_RS09585 (ASP0581_18100) amiD 1783546..1784472 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  EL334_RS09590 (ASP0581_18110) amiC 1784472..1785968 (-) 1497 WP_000759902.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34769.82 Da        Isoelectric Point: 6.6224

>NTDB_id=72151 EL334_RS09575 WP_001291296.1 1781533..1782459(-) (amiF) [Streptococcus pneumoniae strain ASP0581]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQSIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=72151 EL334_RS09575 WP_001291296.1 1781533..1782459(-) (amiF) [Streptococcus pneumoniae strain ASP0581]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAGTATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCTTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTAGCACGTTATCAAAAAGGACTAAACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment