Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   NQK33_RS02170 Genome accession   NZ_CP103055
Coordinates   440069..440584 (+) Length   171 a.a.
NCBI ID   WP_002780549.1    Uniprot ID   A0A3Z9GFK4
Organism   Campylobacter coli strain YC3-24     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435069..445584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQK33_RS02145 (NQK33_02145) - 435525..435863 (+) 339 WP_002777761.1 hypothetical protein -
  NQK33_RS02150 (NQK33_02150) - 435872..436597 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  NQK33_RS02155 (NQK33_02155) dxr 436594..437670 (+) 1077 WP_002799194.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  NQK33_RS02160 (NQK33_02160) - 437667..439061 (+) 1395 WP_002793756.1 M99 family carboxypeptidase catalytic domain-containing protein -
  NQK33_RS02165 (NQK33_02165) tsaD 439058..440065 (+) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  NQK33_RS02170 (NQK33_02170) ctsG 440069..440584 (+) 516 WP_002780549.1 type II secretion system protein Machinery gene
  NQK33_RS02175 (NQK33_02175) - 440584..441834 (+) 1251 WP_002817246.1 DUF2920 family protein -
  NQK33_RS02180 (NQK33_02180) - 441845..443668 (+) 1824 WP_151014837.1 motility associated factor glycosyltransferase family protein -
  NQK33_RS02185 (NQK33_02185) - 443665..445482 (+) 1818 WP_151014840.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.60 Da        Isoelectric Point: 6.4693

>NTDB_id=721217 NQK33_RS02170 WP_002780549.1 440069..440584(+) (ctsG) [Campylobacter coli strain YC3-24]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=721217 NQK33_RS02170 WP_002780549.1 440069..440584(+) (ctsG) [Campylobacter coli strain YC3-24]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9GFK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.813

100

0.918