Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NV391_RS09500 Genome accession   NZ_CP103039
Coordinates   1843412..1843561 (-) Length   49 a.a.
NCBI ID   WP_198033232.1    Uniprot ID   -
Organism   Companilactobacillus crustorum strain X66     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838412..1848561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV391_RS09480 (NV391_09495) - 1838618..1839694 (+) 1077 WP_274764826.1 GDSL-type esterase/lipase family protein -
  NV391_RS09485 (NV391_09500) - 1839845..1840561 (+) 717 WP_057867682.1 GntR family transcriptional regulator -
  NV391_RS09490 (NV391_09505) - 1840626..1841357 (-) 732 WP_057867683.1 GntR family transcriptional regulator -
  NV391_RS09495 (NV391_09510) - 1841416..1843065 (-) 1650 WP_075887331.1 alpha,alpha-phosphotrehalase -
  NV391_RS09500 (NV391_09515) rcrQ 1843412..1843561 (-) 150 WP_198033232.1 hypothetical protein Regulator
  NV391_RS09505 (NV391_09520) - 1843923..1844465 (+) 543 WP_057867686.1 GNAT family N-acetyltransferase -
  NV391_RS09510 (NV391_09525) - 1844907..1845590 (-) 684 WP_057867692.1 GTP pyrophosphokinase -
  NV391_RS09515 (NV391_09530) codA 1845657..1846889 (-) 1233 WP_274764827.1 cytosine deaminase -
  NV391_RS09520 (NV391_09535) - 1847087..1848433 (+) 1347 Protein_1843 cytosine permease -

Sequence

Protein


Download         Length: 49 a.a.        Molecular weight: 5740.50 Da        Isoelectric Point: 4.1520

>NTDB_id=721143 NV391_RS09500 WP_198033232.1 1843412..1843561(-) (rcrQ) [Companilactobacillus crustorum strain X66]
MDYCFLLCKDSDLILVVKDGEIIERGTHTELMNENGFYANMYNSQFTKE

Nucleotide


Download         Length: 150 bp        

>NTDB_id=721143 NV391_RS09500 WP_198033232.1 1843412..1843561(-) (rcrQ) [Companilactobacillus crustorum strain X66]
ATGGACTACTGCTTTCTACTATGTAAAGATTCGGATTTAATTTTGGTAGTTAAAGATGGCGAAATTATTGAACGAGGAAC
ACATACTGAATTAATGAACGAAAATGGTTTTTATGCAAACATGTATAACAGTCAGTTTACTAAAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

65.854

83.673

0.551