Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JQN54_RS10570 Genome accession   NZ_AP024305
Coordinates   1962509..1963774 (+) Length   421 a.a.
NCBI ID   WP_203971311.1    Uniprot ID   -
Organism   Thermus thermophilus strain HB5008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1957509..1968774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN54_RS10540 (TthHB5008_20990) folE 1958751..1959374 (-) 624 WP_011173891.1 GTP cyclohydrolase I FolE -
  JQN54_RS10545 (TthHB5008_21000) - 1959413..1960105 (-) 693 WP_011173892.1 gamma carbonic anhydrase family protein -
  JQN54_RS10550 (TthHB5008_21010) - 1960086..1960466 (-) 381 WP_011228981.1 NUDIX hydrolase -
  JQN54_RS10555 (TthHB5008_21020) - 1960457..1961320 (-) 864 WP_011228982.1 DUF1028 domain-containing protein -
  JQN54_RS10560 (TthHB5008_21030) - 1961422..1961538 (+) 117 Protein_2078 GTP-binding protein -
  JQN54_RS10565 (TthHB5008_21040) - 1961801..1962478 (-) 678 WP_164926081.1 hypothetical protein -
  JQN54_RS10570 (TthHB5008_21050) rarA 1962509..1963774 (+) 1266 WP_203971311.1 replication-associated recombination protein A Machinery gene
  JQN54_RS10575 (TthHB5008_21060) - 1963725..1964294 (-) 570 WP_024119721.1 hypothetical protein -
  JQN54_RS10580 (TthHB5008_21070) - 1964321..1965106 (-) 786 WP_011173899.1 carbohydrate ABC transporter permease -
  JQN54_RS10585 (TthHB5008_21080) - 1965136..1966314 (+) 1179 Protein_2083 CaiB/BaiF CoA transferase family protein -
  JQN54_RS10595 (TthHB5008_21090) - 1966438..1967316 (+) 879 WP_024119719.1 ABC transporter ATP-binding protein -
  JQN54_RS10600 (TthHB5008_21100) - 1967309..1968079 (+) 771 WP_024119718.1 ABC transporter permease -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46079.85 Da        Isoelectric Point: 8.3280

>NTDB_id=72113 JQN54_RS10570 WP_203971311.1 1962509..1963774(+) (rarA) [Thermus thermophilus strain HB5008]
MGEVEPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LRRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLKSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQTARRRRG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=72113 JQN54_RS10570 WP_203971311.1 1962509..1963774(+) (rarA) [Thermus thermophilus strain HB5008]
ATGGGGGAAGTGGAACCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
CCCTAAAGGGCTTCTAAGGCGGATGCTGGAGGCGGGGCGGCTCTCCTCCATGGTCCTCTTCGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCGGCTCCTCGCCGAAGGGGTGGGGAGGCCCTTCCTAAGGCTCTCCGCGGTGGAGGCAGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCGAGGGCAAAGGGGGGCCTCGTCCTCTTCCTGGACGAGGTCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCTTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAGGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTCAAGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAGCCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCGGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCCGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTTAAGGCGCTTCGGGAGCGGTTCCAAACCGCCAGGCGGCGGAGAGGCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)

AAA C-terminal domain (AAA_assoc_2)

(176-243)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.717

100

0.387

Multiple sequence alignment