Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   PUW52_RS09595 Genome accession   NZ_CP118078
Coordinates   1893784..1896138 (+) Length   784 a.a.
NCBI ID   WP_070242083.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1888784..1901138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW52_RS09575 (PUW52_09575) - 1891004..1891552 (-) 549 WP_070815210.1 CvpA family protein -
  PUW52_RS09580 (PUW52_09580) - 1891549..1891854 (-) 306 WP_070812341.1 hypothetical protein -
  PUW52_RS09585 (PUW52_09585) rnhC 1891940..1892830 (+) 891 WP_070812342.1 ribonuclease HIII -
  PUW52_RS09590 (PUW52_09590) lepB 1892834..1893448 (+) 615 WP_274984517.1 signal peptidase I -
  PUW52_RS09595 (PUW52_09595) recD/recD2/recDB 1893784..1896138 (+) 2355 WP_070242083.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PUW52_RS09600 (PUW52_09600) - 1896196..1896606 (+) 411 Protein_1846 transposase -
  PUW52_RS09605 (PUW52_09605) - 1896949..1897617 (-) 669 WP_024052306.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  PUW52_RS09610 (PUW52_09610) - 1897869..1898885 (+) 1017 WP_024052307.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  PUW52_RS09615 (PUW52_09615) galU 1898913..1899812 (+) 900 WP_024052308.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PUW52_RS09620 (PUW52_09620) - 1900252..1900575 (-) 324 WP_024052309.1 AzlD domain-containing protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88430.80 Da        Isoelectric Point: 4.6693

>NTDB_id=721041 PUW52_RS09595 WP_070242083.1 1893784..1896138(+) (recD/recD2/recDB) [Streptococcus anginosus strain VSI16]
MEFYFSGTIERIIFENPSSFFRILLLDIDDTDADFDDFEIIITGTMADIMEGEDYTFWGNLVQHPKYGEQLKITRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNAIDKVLAEPEKLKNIAGLSAKNREAFLTKLRQNYGTERILAKLSEYG
IPNKLAFQIQDFYKEETLEIVEQFPYQLVEDIQGVGFKIADQLAQSLGIENTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELDPSSVADELTCLIEEDKVQNVDTKIFENSLFFAEEGIRISLLRILEKGKQNKFEPAKIEAAI
TQIEIEFAISYDVIQKQAICDAINHKIFILTGGPGTGKTTVINGIIAVYALLHGLDLRKSHDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNTKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQSKDSTIVTLASQIQKGILPTDFIEKKADRSYFEARSEHIPQMIERIVEAAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQNLINPAETEQIIFEATDCQYRQGDKVIHLVNDAENNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSISHRMLQRNLIYTAITRAKSKLILLGEKSAFDFAVKN
TGTARNTYLIQRFSDLLTDEKVIHTSVNNLETTVEKYILTEENFLKINPMIGITDEDIQSVFGE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=721041 PUW52_RS09595 WP_070242083.1 1893784..1896138(+) (recD/recD2/recDB) [Streptococcus anginosus strain VSI16]
ATGGAATTTTACTTTTCAGGCACCATTGAACGCATTATTTTTGAAAATCCCAGCAGTTTCTTTCGGATTCTGCTGTTAGA
TATTGACGACACCGATGCAGATTTTGATGATTTTGAGATTATTATCACGGGCACCATGGCGGATATTATGGAGGGCGAAG
ACTACACTTTTTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAACTCAAAATAACACGCTATGAGCGTGCAAAA
CCAACCAGCAAAGGCTTAGTCAAATATTTTTCAAGCGACCATTTTAAAGGGATTGGTGTAAAAACAGCGCAAAAAATCGT
GGATCTCTATGGCGACAACGCGATTGATAAAGTCTTAGCAGAGCCAGAAAAATTAAAGAATATTGCAGGTCTTTCTGCTA
AAAACCGTGAAGCCTTTCTCACAAAACTAAGACAAAATTACGGCACCGAGAGAATCCTTGCCAAGCTATCTGAATACGGT
ATCCCGAACAAGCTTGCCTTTCAGATTCAAGATTTTTACAAGGAAGAAACTCTCGAAATTGTCGAACAATTTCCTTACCA
ATTAGTAGAAGACATCCAAGGGGTTGGGTTTAAAATTGCCGACCAACTGGCACAAAGCTTAGGAATTGAAAATACTGCTC
CAGAGCGTTTTCGTGCTGGGCTGCTTCACACACTCCTAACCCAGTCTATGGAAAAGGGCGACACTTATCTTGAAGCAAAA
GAACTTCTGGAACATACGATTGAACTCCTCGAAAGTTCCCGTCAGATTGAATTAGACCCAAGTTCTGTTGCGGATGAGCT
GACATGTTTGATTGAAGAAGATAAAGTTCAAAATGTTGATACAAAGATTTTTGAAAACAGTCTCTTTTTTGCCGAAGAAG
GGATTCGCATCAGTCTCCTACGCATTTTAGAAAAAGGGAAGCAAAACAAATTTGAACCGGCAAAAATCGAAGCTGCTATT
ACCCAAATCGAAATTGAGTTTGCCATTTCCTATGATGTGATTCAAAAACAAGCGATTTGTGACGCTATCAATCACAAAAT
TTTTATCCTAACGGGTGGTCCCGGAACGGGAAAAACGACCGTCATCAATGGAATCATTGCTGTTTACGCTCTGCTGCATG
GTTTGGATTTGCGCAAATCTCACGATTTGCCTATTCTTCTAGCAGCTCCGACTGGGCGTGCTGCCAGACGCATGAATGAA
TTAACAGGGCTTCCAAGCGCTACGATTCATCGGCATTTAGGCATGACAGGAGACGATGACACTAGCCATTTAGATGATTA
TTTGGACGCAGACTTTATTATTGTCGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTCCTCAGCAACATTT
CATCAAACACCAAACTCCTAATTGTCGGAGATGCTGATCAGCTGCCTTCTGTCAGCCCCGGACAAGTGCTGGCAGATTTA
CTGAAAATCCCTCTTCTTCCACAGACCAAATTAGAAAAAATTTATCGACAAAGCAAAGATTCCACTATCGTTACCTTAGC
CAGTCAGATTCAAAAAGGCATCCTGCCAACTGATTTTATAGAAAAAAAGGCTGACCGTTCTTATTTTGAAGCGCGTAGTG
AACATATTCCGCAGATGATTGAACGTATTGTAGAAGCTGCTATCCGCAGTGGCATTCCAGCTCAAGATGTGCAGGTGCTT
GCGCCTATGTACCGCGGACAGGCTGGGATTGACCACATCAATCAACTCATGCAAAATCTAATCAACCCTGCCGAAACAGA
ACAAATCATTTTTGAAGCAACTGATTGTCAATATCGACAAGGCGACAAGGTCATTCATCTGGTCAACGACGCTGAAAACA
ATGTGTTCAACGGTGACTTGGGCTATATCACCGATTTGCTACCAGCAAAATATACGGACTCTAAACAGGACGAATTGACT
ATCAACTTTGACGGCAATGAGATTGTTTATCAACGCAGTGAATGGTATAAAATTCGTCTGGCATACGCTATGAGTATCCA
CAAATCTCAGGGTAGTGAATTTCCTGTAGTCATTTTACCGATTACATCCATCAGCCACCGTATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGTGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGACTTTGCTGTCAAAAAC
ACTGGTACAGCTCGCAATACCTATCTAATCCAACGCTTTTCAGACCTCCTAACTGATGAAAAAGTTATACACACTTCTGT
GAATAATTTGGAAACAACTGTGGAAAAATATATCTTGACTGAGGAAAATTTCTTGAAAATCAACCCTATGATTGGAATAA
CGGATGAGGATATTCAAAGTGTTTTTGGAGAATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(333-528)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.499

95.281

0.395