Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NW963_RS07585 Genome accession   NZ_CP102972
Coordinates   1589229..1589915 (-) Length   228 a.a.
NCBI ID   WP_075583650.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 05-RR-90     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1584229..1594915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW963_RS07565 (NW963_07560) rpsT 1585144..1585395 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  NW963_RS07570 (NW963_07565) holA 1585439..1586413 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  NW963_RS07575 (NW963_07570) comEC 1586470..1588671 (-) 2202 WP_258412127.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NW963_RS07580 (NW963_07575) - 1588676..1589137 (-) 462 WP_000439693.1 ComE operon protein 2 -
  NW963_RS07585 (NW963_07580) comEA 1589229..1589915 (-) 687 WP_075583650.1 ComEA family DNA-binding protein Machinery gene
  NW963_RS07590 (NW963_07585) - 1589955..1590671 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  NW963_RS07595 (NW963_07590) rsfS 1590674..1591027 (-) 354 WP_001088022.1 ribosome silencing factor -
  NW963_RS07600 (NW963_07595) yqeK 1591028..1591612 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NW963_RS07605 (NW963_07600) nadD 1591602..1592171 (-) 570 WP_258412128.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NW963_RS07610 (NW963_07605) yhbY 1592174..1592464 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  NW963_RS07615 (NW963_07610) aroE 1592468..1593274 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  NW963_RS07620 (NW963_07615) yqeH 1593288..1594388 (-) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25787.53 Da        Isoelectric Point: 9.6753

>NTDB_id=720918 NW963_RS07585 WP_075583650.1 1589229..1589915(-) (comEA) [Staphylococcus aureus strain 05-RR-90]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=720918 NW963_RS07585 WP_075583650.1 1589229..1589915(-) (comEA) [Staphylococcus aureus strain 05-RR-90]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.123

100

0.991
  comEA Staphylococcus aureus N315

98.246

100

0.982