Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NW955_RS04375 Genome accession   NZ_CP102966
Coordinates   920909..921895 (+) Length   328 a.a.
NCBI ID   WP_000959289.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 29-P-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 915909..926895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW955_RS04350 (NW955_04350) opp4B 916122..917084 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  NW955_RS04355 (NW955_04355) opp4C 917096..917977 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  NW955_RS04360 (NW955_04360) trpS 918019..919008 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -
  NW955_RS04365 (NW955_04365) spxA 919303..919698 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  NW955_RS04370 (NW955_04370) mecA 920069..920788 (+) 720 WP_001217728.1 adaptor protein MecA -
  NW955_RS04375 (NW955_04375) coiA 920909..921895 (+) 987 WP_000959289.1 competence protein CoiA family protein Machinery gene
  NW955_RS04380 (NW955_04380) pepF 921943..923751 (+) 1809 WP_258412887.1 oligoendopeptidase F -
  NW955_RS04385 (NW955_04385) yjbH 924211..925017 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  NW955_RS04390 (NW955_04390) - 925040..925405 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  NW955_RS04395 (NW955_04395) - 925509..926102 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  NW955_RS04400 (NW955_04400) - 926288..926635 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38776.37 Da        Isoelectric Point: 9.5881

>NTDB_id=720698 NW955_RS04375 WP_000959289.1 920909..921895(+) (coiA) [Staphylococcus aureus strain 29-P-01]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAIYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=720698 NW955_RS04375 WP_000959289.1 920909..921895(+) (coiA) [Staphylococcus aureus strain 29-P-01]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATATATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979