NTDB

Overview

Name	comGB	Type	Machinery gene
Locus tag	NW979_RS07370	Genome accession	NZ_CP102959
Coordinates	1566559..1567629 (-)	Length	356 a.a.
NCBI ID	WP_258412557.1	Uniprot ID	-
Organism	Staphylococcus aureus strain 12-G-51
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1561559..1572629

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NW979_RS07330 (NW979_07330)	gcvPA	1561736..1563082 (-)	1347	WP_000019690.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-
NW979_RS07335 (NW979_07335)	gcvT	1563102..1564193 (-)	1092	WP_000093349.1	glycine cleavage system aminomethyltransferase GcvT	-
NW979_RS07340 (NW979_07340)	-	1564352..1564876 (-)	525	WP_001015120.1	shikimate kinase	-
NW979_RS07345 (NW979_07345)	-	1564866..1565012 (-)	147	WP_001789879.1	hypothetical protein	-
NW979_RS07350 (NW979_07350)	comGF	1565109..1565606 (-)	498	WP_029694050.1	competence type IV pilus minor pilin ComGF	Machinery gene
NW979_RS07355 (NW979_07355)	comGE	1565524..1565823 (-)	300	WP_000844413.1	hypothetical protein	Machinery gene
NW979_RS07360 (NW979_07360)	comGD	1565810..1566256 (-)	447	WP_001788899.1	competence type IV pilus minor pilin ComGD	Machinery gene
NW979_RS07365 (NW979_07365)	comGC	1566234..1566545 (-)	312	WP_000472256.1	competence type IV pilus major pilin ComGC	Machinery gene
NW979_RS07370 (NW979_07370)	comGB	1566559..1567629 (-)	1071	WP_258412557.1	competence type IV pilus assembly protein ComGB	Machinery gene
NW979_RS07375 (NW979_07375)	comGA	1567601..1568575 (-)	975	WP_000697220.1	competence type IV pilus ATPase ComGA	Machinery gene
NW979_RS07380 (NW979_07380)	-	1568627..1569250 (-)	624	WP_001223008.1	MBL fold metallo-hydrolase	-
NW979_RS07385 (NW979_07385)	-	1569247..1569576 (-)	330	WP_001018871.1	MTH1187 family thiamine-binding protein	-
NW979_RS07390 (NW979_07390)	-	1569576..1570562 (-)	987	WP_000161315.1	ROK family glucokinase	-
NW979_RS07395 (NW979_07395)	-	1570559..1570762 (-)	204	WP_000087561.1	YqgQ family protein	-
NW979_RS07400 (NW979_07400)	-	1570743..1572206 (-)	1464	WP_001017865.1	rhomboid family intramembrane serine protease	-

Sequence

Protein

Download Length: 356 a.a. Molecular weight: 41446.86 Da Isoelectric Point: 10.1115

                                >NTDB_id=720502 NW979_RS07370 WP_258412557.1 1566559..1567629(-) (comGB) [Staphylococcus aureus strain 12-G-51]

MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG

YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS

SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ

SIVDVYINHSSNPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK

QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide

Download Length: 1071 bp

                                >NTDB_id=720502 NW979_RS07370 WP_258412557.1 1566559..1567629(-) (comGB) [Staphylococcus aureus strain 12-G-51]

GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT

TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA

AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT

TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA

TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA

TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT

TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT

GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT

CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA

TCAATAGTAGACGTTTATATTAACCATAGTAGTAATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA

AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG

AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA

CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC

AATGTTTCAAATGATGCAGAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGB	Staphylococcus aureus MW2	99.719	100	0.997
comGB	Staphylococcus aureus N315	99.719	100	0.997

Detailed information NTG0720502