Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JMH49_RS10085 Genome accession   NZ_AP024270
Coordinates   1877505..1878770 (+) Length   421 a.a.
NCBI ID   WP_201350987.1    Uniprot ID   -
Organism   Thermus thermophilus strain HB5018     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1872505..1883770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMH49_RS10050 (TthHB5018_19970) - 1872553..1873737 (+) 1185 WP_011228979.1 ABC transporter substrate-binding protein -
  JMH49_RS10055 (TthHB5018_19980) folE 1873750..1874370 (-) 621 WP_008633832.1 GTP cyclohydrolase I FolE -
  JMH49_RS10060 (TthHB5018_19990) - 1874409..1875101 (-) 693 WP_011173892.1 gamma carbonic anhydrase family protein -
  JMH49_RS10065 (TthHB5018_20000) - 1875082..1875462 (-) 381 WP_011228981.1 NUDIX hydrolase -
  JMH49_RS10070 (TthHB5018_20010) - 1875453..1876316 (-) 864 WP_011228982.1 DUF1028 domain-containing protein -
  JMH49_RS10075 (TthHB5018_20020) - 1876418..1876534 (+) 117 Protein_1976 GTP-binding protein -
  JMH49_RS10080 (TthHB5018_20030) - 1876797..1877474 (-) 678 WP_201350986.1 hypothetical protein -
  JMH49_RS10085 (TthHB5018_20040) rarA 1877505..1878770 (+) 1266 WP_201350987.1 replication-associated recombination protein A Machinery gene
  JMH49_RS10090 (TthHB5018_20050) - 1878721..1879290 (-) 570 WP_024119721.1 hypothetical protein -
  JMH49_RS10095 (TthHB5018_20060) - 1879317..1880102 (-) 786 WP_011173899.1 carbohydrate ABC transporter permease -
  JMH49_RS10100 (TthHB5018_20070) - 1880132..1881310 (+) 1179 Protein_1981 CaiB/BaiF CoA transferase family protein -
  JMH49_RS10110 (TthHB5018_20080) - 1881434..1882312 (+) 879 WP_024119719.1 ABC transporter ATP-binding protein -
  JMH49_RS10115 (TthHB5018_20090) - 1882305..1883075 (+) 771 WP_024119718.1 ABC transporter permease -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46193.01 Da        Isoelectric Point: 8.9760

>NTDB_id=72011 JMH49_RS10085 WP_201350987.1 1877505..1878770(+) (rarA) [Thermus thermophilus strain HB5018]
MREVEPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESGLLTLIGATAENPAFALIPALRSRLRFFPLRPLEEADLLAL
LRRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLKSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQTARRRRG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=72011 JMH49_RS10085 WP_201350987.1 1877505..1878770(+) (rarA) [Thermus thermophilus strain HB5018]
ATGAGGGAAGTGGAACCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
CCCTAAAGGGCTTCTAAGGCGGATGCTGGAGGCGGGGCGGCTTTCCTCCATGGTCCTCTTCGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCGGCTCCTCGCCGAAGGGGTGGGGAGGCCCTTCCTAAGGCTTTCCGCGGTGGAGGCGGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCGAGGGCAAAGGGGGGCCTCGTCCTCTTCCTGGACGAGGTCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCATCCCCGCCCTCCGCTCCCGCCTCCGCTTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAGGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTCAAGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAGCCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCGGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCCGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTTAAGGCGCTTCGGGAGCGGTTCCAAACCGCCAGGCGGCGGAGAGGCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)

AAA C-terminal domain (AAA_assoc_2)

(176-243)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.717

100

0.387

Multiple sequence alignment