Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PT798_RS07750 Genome accession   NZ_CP117979
Coordinates   1609581..1610354 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain B-41012     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1604581..1615354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT798_RS07730 trmFO 1604925..1606232 (+) 1308 WP_000195260.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  PT798_RS07735 xerC 1606649..1607545 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  PT798_RS07740 hslV 1607542..1608087 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  PT798_RS07745 hslU 1608153..1609556 (+) 1404 WP_000379049.1 ATP-dependent protease ATPase subunit HslU -
  PT798_RS07750 codY 1609581..1610354 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PT798_RS07755 - 1610397..1610501 (+) 105 WP_031774985.1 hypothetical protein -
  PT798_RS07760 rpsB 1610700..1611467 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  PT798_RS07765 - 1611501..1611614 (+) 114 WP_001789890.1 hypothetical protein -
  PT798_RS07770 tsf 1611649..1612530 (+) 882 WP_000201387.1 translation elongation factor Ts -
  PT798_RS07775 pyrH 1612667..1613389 (+) 723 WP_000057330.1 UMP kinase -
  PT798_RS07780 frr 1613408..1613962 (+) 555 WP_001280006.1 ribosome recycling factor -
  PT798_RS07785 - 1614335..1615105 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=720102 PT798_RS07750 WP_000055337.1 1609581..1610354(+) (codY) [Staphylococcus aureus strain B-41012]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=720102 PT798_RS07750 WP_000055337.1 1609581..1610354(+) (codY) [Staphylococcus aureus strain B-41012]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428