Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   PBV52_RS16330 Genome accession   NZ_CP117866
Coordinates   3668448..3670697 (-) Length   749 a.a.
NCBI ID   WP_274239097.1    Uniprot ID   -
Organism   Streptomyces sp. T12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3663448..3675697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBV52_RS16315 (PBV52_16315) - 3663607..3663846 (+) 240 WP_274239094.1 heavy-metal-associated domain-containing protein -
  PBV52_RS16320 (PBV52_16320) - 3663855..3666101 (+) 2247 WP_274239095.1 cation-translocating P-type ATPase -
  PBV52_RS16325 (PBV52_16325) - 3666893..3668182 (-) 1290 WP_274239096.1 citrate synthase -
  PBV52_RS16330 (PBV52_16330) recD/recD2/recDB 3668448..3670697 (-) 2250 WP_274239097.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PBV52_RS16335 (PBV52_16335) - 3670763..3671128 (-) 366 WP_274239098.1 hypothetical protein -
  PBV52_RS16340 (PBV52_16340) - 3671356..3672393 (+) 1038 WP_274239099.1 LacI family DNA-binding transcriptional regulator -
  PBV52_RS16345 (PBV52_16345) - 3672390..3673919 (+) 1530 WP_274239100.1 sugar ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 749 a.a.        Molecular weight: 80953.50 Da        Isoelectric Point: 6.8899

>NTDB_id=719564 PBV52_RS16330 WP_274239097.1 3668448..3670697(-) (recD/recD2/recDB) [Streptomyces sp. T12]
MSNQAGSDERRAAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGALLGAQVGESLRMEGRWGSHPQYGKQFTVE
NYTTVLPATVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLKIIEEEPKRLIEVPGLGPKRTKKIADAWDEQKAIKEVM
LFLQTVEVSTSIAVRIYKKYGDASISVVKNQPYRLAADVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQATDQGN
CYLPEEQLIADAVKLLQVDTGLVIECLGELAQVPEDGGDPGVVREKVPGPDGDSEPVTAVYLVPFHRAELSLSAQLLRLL
RTDEDRMPGFRDVTWDKALGWLKSRTGADLAPEQEQAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARAKKARVVLAAP
TGRAAKRLAELTGAEASTVHRLLELKPGGDAAYDRDRPLQADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLP
SVGAGEVLRDLLADGGPIPAVRLTRVFRQAQQSGVVTNAHRINAGQHPVTDGMKDFFLFVEDDTEAAGRLTVDVAARRIP
AKFGLDPRRDVQVLAPMHRGPAGAGNLNGLLQQAISPGRPDLAEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVV
TSLDPVDQRLTVLTDEDEEVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLV
GSRKAIGQAVRTVSAGRRCTALDFRLAGS

Nucleotide


Download         Length: 2250 bp        

>NTDB_id=719564 PBV52_RS16330 WP_274239097.1 3668448..3670697(-) (recD/recD2/recDB) [Streptomyces sp. T12]
ATGTCCAATCAGGCGGGGAGCGACGAGCGGCGAGCGGCGGTACTCGAAGGCGTCCTGGAGCGCATCACGTACGCCAACGA
GGAGAACGGCTACACGGTCGCCCGGGTCGACACCGGCAGAGGGGCGGGCGACCTCCTCACGGTCGTCGGCGCGCTGCTCG
GCGCCCAGGTCGGCGAGTCGCTGCGGATGGAGGGCCGTTGGGGCTCCCACCCCCAGTACGGCAAGCAGTTCACCGTCGAG
AACTACACCACCGTCCTCCCGGCCACCGTCCAGGGCATCCGCCGCTATCTCGGCTCCGGCCTGGTCAAGGGCATCGGCCC
GGTCTTCGCCGACCGCATCACCCAGCACTTCGGCCTGGACACCCTGAAGATCATCGAGGAGGAGCCCAAGCGGCTCATCG
AGGTCCCCGGCCTCGGCCCCAAGCGGACCAAGAAGATCGCCGACGCCTGGGACGAGCAGAAGGCGATCAAGGAGGTCATG
CTCTTCCTCCAGACGGTCGAGGTCTCGACGTCGATCGCCGTGCGCATCTACAAGAAGTACGGCGACGCCTCGATCTCCGT
CGTGAAGAACCAGCCGTACCGGCTGGCGGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCCG
TCGGCATCCCGCACGACAGCCCGGAGCGGGTGAAGGCAGGCCTGCAGTACGCGCTGTCGCAGGCCACCGACCAGGGCAAC
TGCTACCTCCCCGAGGAGCAGTTGATCGCGGACGCGGTGAAGCTGCTCCAGGTCGACACCGGGCTCGTCATCGAGTGCCT
CGGGGAGCTGGCCCAGGTCCCCGAGGACGGCGGCGACCCCGGTGTCGTACGGGAGAAGGTGCCCGGTCCCGACGGCGACT
CGGAGCCCGTGACCGCCGTCTACCTCGTCCCCTTCCATCGGGCCGAACTCTCCCTCTCCGCCCAGCTGTTGCGCCTGCTG
CGCACCGACGAGGACCGGATGCCGGGCTTCCGTGACGTGACCTGGGACAAGGCCCTGGGCTGGCTGAAGAGCCGTACGGG
CGCCGACCTCGCCCCCGAGCAGGAGCAGGCGGTGCGCCTCGCGCTCACCGAGAAGGTCGCCGTCCTCACCGGAGGCCCCG
GCTGCGGAAAGTCCTTCACGGTCCGCTCGATCGTGGAGCTGGCCCGCGCCAAGAAGGCCAGGGTCGTGCTGGCCGCCCCC
ACGGGACGCGCCGCCAAGCGCCTCGCCGAGCTCACCGGCGCCGAGGCCTCCACCGTCCACCGCCTCCTGGAGCTCAAGCC
GGGCGGCGACGCGGCGTACGACCGGGACCGCCCGCTCCAGGCCGACCTGGTGGTGGTCGACGAGGCGTCCATGCTGGACC
TGCTGCTCGCCAACAAGCTGGTCAAAGCCGTACCGCCGGGCGCGCATCTGCTCTTCGTCGGGGACGTGGACCAGCTGCCC
AGCGTCGGTGCGGGGGAGGTGCTCCGGGACCTCCTGGCGGACGGCGGCCCGATCCCCGCCGTACGCCTGACCCGCGTCTT
CCGCCAGGCCCAGCAGTCCGGCGTGGTGACCAACGCGCACCGGATCAACGCCGGGCAGCACCCGGTCACGGACGGCATGA
AGGACTTCTTCCTCTTCGTCGAGGACGACACGGAGGCGGCCGGACGGCTCACGGTGGACGTGGCGGCCCGCCGCATTCCG
GCCAAGTTCGGTCTCGACCCGCGCCGGGACGTCCAGGTCCTGGCCCCCATGCACCGAGGGCCGGCCGGCGCGGGCAATCT
GAACGGCCTGCTCCAGCAGGCCATCAGCCCCGGCCGCCCCGATCTGGCGGAGAAGCGGTTCGGCGGGCGGGTCTTCCGCG
TCGGCGACAAGGTCACCCAGATTCGCAACAATTACGAGAAGGGGAAGAACGGCGTCTTCAACGGCACGGTGGGCGTGGTC
ACCTCGCTCGACCCGGTCGACCAGCGGCTCACGGTGCTGACGGACGAGGACGAGGAGGTTCCGTACGAATTCGATGAACT
GGACGAACTGGCGCACGCGTACGCGGTGACGATCCACCGTTCACAGGGAAGTGAATATCCCGCTGTGGTGATCCCCGTCA
CCACCGGAGCATGGATGATGCTCCAGCGGAACCTGCTGTACACGGCGGTGACCCGCGCCAAGCGCCTGGTCGTCCTCGTG
GGTTCACGCAAGGCGATCGGCCAGGCGGTGCGCACGGTGTCGGCGGGCCGGCGCTGCACGGCGCTCGACTTCCGGCTCGC
GGGCTCCTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-720)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-242)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(587-652)

Helix-hairpin-helix domain (HHH_5)

(102-150)

AAA domain (AAA_30)

(350-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.149

100

0.362