Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | NWE21_RS00800 | Genome accession | NZ_CP102748 |
| Coordinates | 126384..127337 (+) | Length | 317 a.a. |
| NCBI ID | WP_011922562.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain Transconjugant cSFJ45 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 121384..132337
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NWE21_RS00760 (NWE21_00760) | - | 121654..122597 (-) | 944 | Protein_116 | S66 family peptidase | - |
| NWE21_RS00765 (NWE21_00765) | comYA | 122683..123633 (+) | 951 | WP_011921718.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| NWE21_RS00770 (NWE21_00770) | comYB | 123545..124582 (+) | 1038 | WP_011921719.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| NWE21_RS00775 (NWE21_00775) | comYC | 124584..124865 (+) | 282 | WP_011921720.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| NWE21_RS00780 (NWE21_00780) | comGD | 124846..125253 (+) | 408 | WP_011921721.1 | competence type IV pilus minor pilin ComGD | - |
| NWE21_RS00785 (NWE21_00785) | comYE | 125225..125518 (+) | 294 | WP_011921722.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| NWE21_RS00790 (NWE21_00790) | comGF/cglF | 125505..125939 (+) | 435 | WP_011922561.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| NWE21_RS00795 (NWE21_00795) | comGG | 125917..126327 (+) | 411 | WP_011921724.1 | competence type IV pilus minor pilin ComGG | - |
| NWE21_RS00800 (NWE21_00800) | comYH | 126384..127337 (+) | 954 | WP_011922562.1 | class I SAM-dependent methyltransferase | Machinery gene |
| NWE21_RS00805 (NWE21_00805) | - | 127387..128574 (+) | 1188 | WP_012775422.1 | acetate kinase | - |
| NWE21_RS00810 (NWE21_00810) | - | 128889..129440 (+) | 552 | WP_012774908.1 | folate family ECF transporter S component | - |
| NWE21_RS00815 (NWE21_00815) | - | 129496..130752 (+) | 1257 | WP_011921729.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| NWE21_RS00820 (NWE21_00820) | pepA | 130799..131860 (-) | 1062 | WP_011921730.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35776.92 Da Isoelectric Point: 4.5177
>NTDB_id=718738 NWE21_RS00800 WP_011922562.1 126384..127337(+) (comYH) [Streptococcus suis strain Transconjugant cSFJ45]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNATYVAGQHETDLVVKNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPKEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKTAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNATYVAGQHETDLVVKNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPKEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKTAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=718738 NWE21_RS00800 WP_011922562.1 126384..127337(+) (comYH) [Streptococcus suis strain Transconjugant cSFJ45]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACTAA
TATCTATGATGCCATGATTGAGCAAAATGCTACTTACGTAGCTGGTCAGCATGAGACGGATCTTGTTGTCAAAAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTATCAATTCTTGCTCATCAAGGCCAATCAGACT
GAGCCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTATTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGTCCAAAGGAACATACCTACGCCCATCATTTGCTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GACTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACTAA
TATCTATGATGCCATGATTGAGCAAAATGCTACTTACGTAGCTGGTCAGCATGAGACGGATCTTGTTGTCAAAAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTATCAATTCTTGCTCATCAAGGCCAATCAGACT
GAGCCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTATTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGTCCAAAGGAACATACCTACGCCCATCATTTGCTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GACTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60.443 |
99.685 |
0.603 |
| comYH | Streptococcus mutans UA159 |
60.127 |
99.685 |
0.599 |