Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   NWE22_RS06425 Genome accession   NZ_CP102747
Coordinates   1254865..1255704 (-) Length   279 a.a.
NCBI ID   WP_239603976.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SFJ45     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1249865..1260704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE22_RS06410 (NWE22_06410) pheT 1249951..1252350 (-) 2400 WP_239603974.1 phenylalanine--tRNA ligase subunit beta -
  NWE22_RS06415 (NWE22_06415) - 1252352..1252873 (-) 522 WP_239604848.1 GNAT family N-acetyltransferase -
  NWE22_RS06420 (NWE22_06420) pheS 1253520..1254563 (-) 1044 WP_239603975.1 phenylalanine--tRNA ligase subunit alpha -
  NWE22_RS06425 (NWE22_06425) endA 1254865..1255704 (-) 840 WP_239603976.1 DNA/RNA non-specific endonuclease Machinery gene
  NWE22_RS06430 (NWE22_06430) - 1255734..1255925 (-) 192 WP_239603977.1 DNA-directed RNA polymerase subunit beta -
  NWE22_RS06435 (NWE22_06435) murA 1255918..1257201 (-) 1284 WP_277745249.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NWE22_RS06440 (NWE22_06440) - 1257224..1257451 (-) 228 WP_171988707.1 DUF1146 family protein -
  NWE22_RS06445 (NWE22_06445) - 1257511..1257927 (-) 417 WP_171988708.1 F0F1 ATP synthase subunit epsilon -
  NWE22_RS06450 (NWE22_06450) atpD 1257937..1259343 (-) 1407 WP_277745250.1 F0F1 ATP synthase subunit beta -
  NWE22_RS06455 (NWE22_06455) - 1259365..1260243 (-) 879 WP_171988710.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30067.35 Da        Isoelectric Point: 6.7649

>NTDB_id=718699 NWE22_RS06425 WP_239603976.1 1254865..1255704(-) (endA) [Streptococcus parasuis strain SFJ45]
MAKKNVKKQAMSLLSLLATIVAVAGGYLLSDNKSSNVADYSYYVNRSKASEGTPSQELANSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTVLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREATGNGRTSWTPAGWHQIHDLPGEYDHA
VDRGHLLGYALIGGLAGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=718699 NWE22_RS06425 WP_239603976.1 1254865..1255704(-) (endA) [Streptococcus parasuis strain SFJ45]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTTTGCTCAGCTTATTGGCTACGATTGTTGCAGTAGCGGGTGGCTA
TCTTTTAAGCGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCGGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAATTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGGAATCAAACGGTTTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
GACAGTTCAGGGAGAAACGGTTCCAACGGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGATCGTGAAG
CAACTGGTAATGGACGTACGTCATGGACTCCTGCTGGCTGGCACCAAATTCATGATTTGCCAGGGGAATATGATCATGCA
GTTGATCGTGGACATCTTTTAGGCTATGCCTTGATTGGTGGTCTTGCTGGATTTGATGCCTCAACAAGTAATCCCAAAAA
CATAGCGGTTCAAACTGCCTGGTCTAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAAATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGTCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTGAATGAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.882

91.398

0.602
  endA Streptococcus pneumoniae D39

65.882

91.398

0.602
  endA Streptococcus pneumoniae R6

65.882

91.398

0.602
  endA Streptococcus pneumoniae TIGR4

65.882

91.398

0.602