Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PSQ21_RS09160 Genome accession   NZ_CP117709
Coordinates   2131445..2133178 (+) Length   577 a.a.
NCBI ID   WP_274029946.1    Uniprot ID   -
Organism   Streptomyces sp. MMBL 11-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2126445..2138178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSQ21_RS09125 - 2127242..2127478 (+) 237 WP_274029943.1 hypothetical protein -
  PSQ21_RS09130 - 2127481..2128068 (+) 588 WP_274029944.1 hypothetical protein -
  PSQ21_RS09150 - 2129379..2129684 (+) 306 WP_274035683.1 YtxH domain-containing protein -
  PSQ21_RS09155 - 2129751..2131205 (+) 1455 WP_274029945.1 FGGY family carbohydrate kinase -
  PSQ21_RS09160 rcrP 2131445..2133178 (+) 1734 WP_274029946.1 ABC transporter ATP-binding protein Regulator
  PSQ21_RS09165 rcrQ 2133178..2135106 (+) 1929 WP_274029947.1 ABC transporter ATP-binding protein Regulator
  PSQ21_RS09170 rpoS 2135125..2136216 (-) 1092 WP_274029948.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62480.58 Da        Isoelectric Point: 5.3848

>NTDB_id=718518 PSQ21_RS09160 WP_274029946.1 2131445..2133178(+) (rcrP) [Streptomyces sp. MMBL 11-1]
MLIKLLRAHLGPYKKPIVLLVFLQLLQTCATLYLPSLNADIIDNGVVQGDTGYILEFGGLMIAVSVVQVLCNVGAVYYGA
RTASALGRDVRAAVFDRVQSFSARELGRFGAPSLITRSTNDVQQIQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGVSVGLIVKRMRPLFRTMQERLDSVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVSVATGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERVEEVLGTESSVVP
PVAPVTELRRHGHLEVRGAEFRYPGAEEPVLRAVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTDGEVLVDGEDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFIEALEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRVVGTGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=718518 PSQ21_RS09160 WP_274029946.1 2131445..2133178(+) (rcrP) [Streptomyces sp. MMBL 11-1]
GTGCTCATAAAACTCCTGCGGGCCCATCTGGGCCCGTACAAGAAACCCATCGTGCTGCTGGTGTTCCTCCAGCTGCTCCA
GACCTGCGCCACTCTGTATCTGCCCAGCCTGAACGCCGACATCATCGACAACGGTGTCGTCCAGGGCGACACCGGCTACA
TCCTGGAGTTCGGCGGTCTCATGATCGCCGTCAGTGTCGTCCAGGTCCTCTGCAATGTGGGGGCCGTGTACTACGGGGCC
CGGACCGCCTCCGCCCTCGGGCGCGATGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCCCGTGAGCTCGG
GCGCTTCGGGGCGCCCTCGCTGATCACCCGGAGCACCAACGACGTCCAGCAGATCCAGATGCTGGTGCTGATGGCGTTCA
CCCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTGGGGCAGGACGTGCCGCTCTCCGCGGTG
CTGCTGGCGGTCGTGCCGGTGCTCGGCGTCTCGGTCGGCCTCATCGTGAAGAGGATGCGGCCGCTGTTCCGCACCATGCA
GGAGCGGCTGGACTCGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGTGCCTTCGTCCGGGACG
GGTACGAGGAGAAGCGGTTCCGGGGCGCCAACACCGAGCTGACCGATGTGTCGGTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACGGTGATGACGGTGGTCAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGTATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCGTCGAGGAGGTGCTCGGGACCGAGTCCAGTGTCGTGCCG
CCCGTCGCGCCGGTGACCGAGCTGCGGCGGCACGGGCATCTGGAGGTGCGGGGCGCCGAGTTCCGCTATCCGGGCGCGGA
GGAGCCCGTGCTGCGGGCCGTGGATCTGGTGGCCAGGCCCGGGGAGACGACCGCGGTCATCGGGTCGACGGGCAGCGGGA
AGTCCACGCTGCTCGGGCTCGTACCCCGGCTGTTCGATGTGACGGACGGTGAGGTGCTGGTCGACGGCGAGGACGTGCGG
ACGCTGGATCCGGTGCTGCTGGCGAAGACGGTGAGCCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGAACGGTCGCGAC
GAACCTGCGGTACGGGAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCA
TCGAGGCGCTGGAACACGGGCTCGACGCGCCGATCGCGCAGGGCGGCACCAATGTGTCCGGCGGTCAGCGGCAGCGGCTC
GCCATCGCCCGGACGCTGGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCGTTCTCCGCGCTGGACTACGCGACCGA
TGCCGCGCTGCGCGCGGCGCTGGGCCGGGAGACGGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTGGGGACCGGCACCCATCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.28

100

0.397