Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PSP57_RS26940 Genome accession   NZ_CP117527
Coordinates   5721160..5721585 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain MF1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5716160..5726585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSP57_RS26925 (PSP57_26925) pilX 5716724..5717311 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PSP57_RS26930 (PSP57_26930) pilY1 5717323..5720814 (+) 3492 WP_023096128.1 type 4a pilus biogenesis protein PilY1 -
  PSP57_RS26935 (PSP57_26935) pilY2 5720816..5721163 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PSP57_RS26940 (PSP57_26940) comF 5721160..5721585 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PSP57_RS26945 (PSP57_26945) ispH 5721632..5722576 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PSP57_RS26950 (PSP57_26950) fkpB 5722662..5723102 (-) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PSP57_RS26955 (PSP57_26955) lspA 5723095..5723604 (-) 510 WP_003094728.1 signal peptidase II -
  PSP57_RS26960 (PSP57_26960) ileS 5723597..5726428 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=718393 PSP57_RS26940 WP_003094721.1 5721160..5721585(+) (comF) [Pseudomonas aeruginosa strain MF1]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=718393 PSP57_RS26940 WP_003094721.1 5721160..5721585(+) (comF) [Pseudomonas aeruginosa strain MF1]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383