Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NVV61_RS07175 Genome accession   NZ_CP102627
Coordinates   1439050..1441446 (-) Length   798 a.a.
NCBI ID   WP_187984122.1    Uniprot ID   -
Organism   Listeria innocua strain F4078     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1434050..1446446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV61_RS07155 (NVV61_07155) - 1434524..1435219 (-) 696 WP_010991584.1 ABC transporter ATP-binding protein -
  NVV61_RS07160 (NVV61_07160) - 1435228..1436730 (-) 1503 WP_187984121.1 ABC transporter permease -
  NVV61_RS07165 (NVV61_07165) pieR 1436898..1437584 (+) 687 WP_003762357.1 two component system response regulator PieR -
  NVV61_RS07170 (NVV61_07170) pieS 1437581..1439020 (+) 1440 WP_003771912.1 two component system sensor histidine kinase PieS -
  NVV61_RS07175 (NVV61_07175) recD2 1439050..1441446 (-) 2397 WP_187984122.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NVV61_RS07180 (NVV61_07180) - 1441472..1442110 (-) 639 WP_010991587.1 tetratricopeptide repeat protein -
  NVV61_RS07185 (NVV61_07185) - 1442154..1442894 (-) 741 WP_003766975.1 alpha/beta hydrolase -
  NVV61_RS07190 (NVV61_07190) mnmA 1443012..1444127 (-) 1116 WP_010991588.1 tRNA 2-thiouridine(34) synthase MnmA -
  NVV61_RS07195 (NVV61_07195) - 1444146..1445294 (-) 1149 WP_003762369.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90152.38 Da        Isoelectric Point: 4.8394

>NTDB_id=718220 NVV61_RS07175 WP_187984122.1 1439050..1441446(-) (recD2) [Listeria innocua strain F4078]
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNAIWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGTAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQVYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQAILLQQIEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGESQRAALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQFPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFAKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLMSEDVMLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=718220 NVV61_RS07175 WP_187984122.1 1439050..1441446(-) (recD2) [Listeria innocua strain F4078]
ATGGCTGAACAAGAATCTCTCGCCTTATTTAATGATACCCCAGAAGAACTTTTCATGAAGGGGACGATGTTGTCTACCAT
TTTTTATAATGCCGAAAACCTCTTTTCTGTGGTAAGAATTCTAGTAAAAGAGACGAATGCGATTTGGGATGAAAAGGATA
TTATTGTAACTGGTTTTTTCCCAGCACTTCATGAACAAGAAGTGTATACTTTTTACGGAAAAATGCAGGAACATGCTAAA
TTTGGTCAGCAATTTAAAGCGGACCGGTTTCGAAAAGAAATGCCTCAATCTCGCGCTGGCTTGATTAACTATCTTTCAGG
GGAACTTTTCAAAGGGATTGGTAAAGTAACAGCGGAAAACATTGTCGATACAATTGGTGATGACGCGATTACGAAAATAC
TATCTGACCCAAGTTTACTAAATACTGTTCCTAAACTGCCTTCTGGAACAGCGGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGTTTAGAGCATGTGATGGTTGGTTTAAATGAATATGGCTTTGGCCCGCAATTATCCATGAAAATTTTTCAGGT
ATATAAACAAAATGCGATCGAAGTGCTAGAAAATAATCCTTATAAATTAATTGAAGATGTTAAAGGAATTGGTTTCCAGC
GTGCTGATGAGCTTGGACGTAAGCTTGGACTTGGCGGAAACCATCCAGAACGACTTAGAGCAGGAATTTTATTTATGCTA
GATTCCGTTTGTATGCAGCAAGGTCATGTCTATATGGAACAAGAGGTTTTGCTCGGGGAAGTAACTTATCTGCTAGAAGA
AAGTGAAGGCATTAGGATTGATCAGGCAATTTTACTGCAACAAATAGAAAAACTTGCAGAAGAACAAAAAATAATTACCG
AAAACACGCGCGTCTATATGCCGTCACTTTATTATTCAGAAAGCGGTTTTGCTTACCATGTAAAACGAATGTTAAAGCAA
ACAGAGTATCAAGAACAATTTCCGCAATCGGAGTTTTTATTAGCGCTTGGGGAACTTGAAGAGCGCATTGGCGTGCATTA
CGGGGAATCTCAACGTGCGGCATTAGAACAAGCTTTAATGTCACCGATGCTTGTTCTTACTGGAGGACCAGGAACAGGGA
AAACGACTGTTATTAAAGGAATTGTAGAATTATATGCCGAGTTAAATGGTGTTAGTCTTGATCCACATGCCTATAAAGAT
GGTGCGACTTTTCCAGTGTTACTCGCAGCTCCAACAGGTCGTGCGGCTAAACGAATGTCTGAATCCACTGGCCTTCCAGC
AATGACGATTCACCGGTTACTTGGAATGAATGGCCAAGAACAGATGGATGACGATGCAGAACGATTAATTGATGGACGTT
TGTTAATTGTGGATGAAATGTCAATGGTGGATATTTGGCTTGCGAATCAATTATTCCGCGCTTTACCTGCTCATATGCAA
GTAGTGCTCGTTGGCGACCAAGACCAGCTTCCATCTGTTGGACCTGGTCAAGTATTAAAAGATATTCTTCAATCAGAACA
ATTTCCGACGGTTGCACTTTCAGATATTTATCGGCAAAAAGATGGTTCTTCCATCATTGAAATGGCTCATTATATCAAAG
AAGGAATGCTGCCAGCTGATTTTGCGAAAAATAGTGCCGATCGGTCATTTTTCCACTGTACTGTAAATCAAATTGGTGAC
GTTGTGGAACAAGTCGTGAAAAATGCTAAAAATAAAGGTTTTCGTGCAAAGGATATTCAAGTGTTGGCTCCAATGTATCG
CGGTCCAGCTGGAATTGATATATTAAATAAAAAACTACAAGAAATCTTTAATCCAAACGATACTGGTCGACGAAAAGAAG
TACAATTTGGCGAAATCAAATACCGGGTTCACGACAAAGTGTTGCAACTAATCAACCAACCAGAAAAAAATGTTTTTAAC
GGTGACATTGGCGAAATCGTATCCATTATTTATGCCAAAGAAAATACGGAAAAACAAGATTTAATTGTCGTTCAATTTGA
CCAGACAGAGGTGTCTTATTATCGACAAGAATTTAATCAATTGACCCATGCGTATTGTTGTTCGATTCATAAAGCGCAGG
GTAGTGAATTTCCGATTGTTATAATGCCAATTGTGCGTAGTTATTACCGGATGTTACGTAGAGATTTGTTATATACTGGC
GTTACAAGAAGTAAACAATTCCTAATTCTTTGCGGAGAAGAAGAAGCTTTCCGAATGGGTGTAGAACGTGTAGATGAAAA
TAAGCGGAATACAACGCTATCGGAACGTTTAATGAGTGAAGATGTGATGCTCGAACAAATGACAAATAAACGAATATTAA
CTGCCGAAAACATTACGGAGATTGATCCGATGATTGGGATGGAAGGAATTACTCCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(347-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.107

98.747

0.564